PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05625.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 431aa MW: 47180.7 Da PI: 5.2118

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05625.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00079	272	306	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN+++ L++l+ + ++Le+Av+Y++ Lq Zmw_sc05625.1.g00030.1.am.mk 272 RRRRERINDKLKILQKLVDIS-----------TMLEEAVQYVRFLQ 306 9****************9776...........67888888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-10	261	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-7	267	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-4	268	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-8	271	310	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MPSTNLGFCP PALAVASRTP RMSQAELLHW CSAYHAAPPA DDESEIVAQF LAAPYPYQND 60 DDDQDHQKQL GDDIRTGSAY WPEHVADPGA GACYWPPNAD SSNRGNASSD GGYVDNGGFY 120 YYYLGEPDVS LGINTRATLP CTSLDLNLLG DGEEERSVCA QLPVPDPNPS AADHVRVFHH 180 DVGNDGTTVS RPKRKVPASR DEGDLRGGHR KKEKKASTSS KPGQKCFQEK AQSSSSCSRN 240 ESNCSEAQAC GVNVKTRASK GSATDPQSLY ARRRRERIND KLKILQKLVD ISTMLEEAVQ 300 YVRFLQLQIK MLSSDEMWMY APIAYNGMSL GIDLKISPHM VLSIGEILYK PSKLSMTATS 360 STMVREPELE AELKGGGDRL LVPKLEKYDD ETMEKKTDCV MGQQLLDQAS WPNQEADEAA 420 ANAKASATLH A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MPSTNLGFCP PALAVASRTP RMSQAELLHW CSAYHAAPPA DDESEIVAQF LAAPYPYQND  60
DDDQDHQKQL GDDIRTGSAY WPEHVADPGA GACYWPPNAD SSNRGNASSD GGYVDNGGFY  120
YYYLGEPDVS LGINTRATLP CTSLDLNLLG DGEEERSVCA QLPVPDPNPS AADHVRVFHH  180
DVGNDGTTVS RPKRKVPASR DEGDLRGGHR KKEKKASTSS KPGQKCFQEK AQSSSSCSRN  240
ESNCSEAQAC GVNVKTRASK GSATDPQSLY ARRRRERIND KLKILQKLVD ISTMLEEAVQ  300
YVRFLQLQIK MLSSDEMWMY APIAYNGMSL GIDLKISPHM VLSIGEILYK PSKLSMTATS  360
STMVREPELE AELKGGGDRL LVPKLEKYDD ETMEKKTDCV MGQQLLDQAS WPNQEADEAA  420
ANAKASATLH A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	214	KRKVPASRDEGDLRGGHRKKEKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796889.1	1e-109	transcription factor bHLH85-like
TrEMBL	A0A2S3IHT2	1e-108	A0A2S3IHT2_9POAL; Uncharacterized protein
TrEMBL	A0A3L6TQD7	1e-108	A0A3L6TQD7_PANMI; Transcription factor bHLH85-like
STRING	Si039720m	1e-107	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14445	21	23