PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05627.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 417aa    MW: 46144.5 Da    PI: 9.1897
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05627.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82e-09107131226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   + + C+++ ++G CkyG  C+F+H+
  Zmw_sc05627.1.g00030.1.am.mk 107 GKPDCSYYVKFGSCKYGMDCRFNHP 131
                                   7899********************8 PP
2zf-CCCH25.22.9e-08158183126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C+++ ++G CkyG  C F+H+
  Zmw_sc05627.1.g00030.1.am.mk 158 PGEPDCSYYVKFGSCKYGMDCMFNHP 183
                                   5789*********************8 PP
3zf-CCCH25.22.9e-08210235126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C+++ ++G CkyG  C F+H+
  Zmw_sc05627.1.g00030.1.am.mk 210 PGEPDCSYYVKFGSCKYGMDCWFNHP 235
                                   5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.305105133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013105132IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6107131IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347157185IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5159183IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347209237IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5211235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5213238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLAAEPTASA GIAKKQSMPS ALRKGTTKRN PRAGHGPSKD LTPRPGLAPS TGLPSLLPLH  60
KLCSIGSCKH RMAYSFNHPA KPSVWQSRHA RASEQLVHDS VYPRRPGKPD CSYYVKFGSC  120
KYGMDCRFNH PSKPCGWQGR HTAADEKQEH ESVYPRRPGE PDCSYYVKFG SCKYGMDCMF  180
NHPSKPCGWQ GRHTAADEKQ EHESVYPQRP GEPDCSYYVK FGSCKYGMDC WFNHPLHEPM  240
VPTLFPVDSP TQKLFGALLD GVIVGGALVN SVEDLGNRRR LRPVHGHLRA RYARASPLPC  300
SAPPSSFISS LPQPVAPRAR FDVSVARSEK RLVAQLVSRR LLEPMAHHNP CGNEAVADEC  360
DLVSGCRGVL VSGQQGEASS TARDRMARRA LNFGGYCFDV GEEGKYLQFF QIISFIQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2234747