PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05645.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23751.4 Da    PI: 12.1003
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05645.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.6e-24146194250
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   rien   rqvtfskRr g+ KKA EL vLCd++va++ifs +gk+++++
  Zmw_sc05645.1.g00040.1.am.mk 146 RIENAVSRQVTFSKRRRGLAKKARELAVLCDVDVALLIFSDKGKFHDFA 194
                                   8**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-29137196IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.833137197IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-24138197IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-25139159IPR002100Transcription factor, MADS-box
PROSITE patternPS003500139193IPR002100Transcription factor, MADS-box
PfamPF003192.0E-23146193IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-25159174IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-25174195IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVIMHLAVTA HAKIWRWISR RRREVKLGGN PDHERQLLQS DVDTASPLDR RPTTRPGEQV  60
VAPLGRCQHG GAIFGAWPWR QLLPWTIDGI RGPGHARTLS PRATVAVDVS AYEAALLLAK  120
PASRRRRRDT GEGMMGRGRG RVEVRRIENA VSRQVTFSKR RRGLAKKARE LAVLCDVDVA  180
LLIFSDKGKF HDFAAHGRYA AGRSPLFRAT RS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7585522