PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05647.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 306aa    MW: 31459.8 Da    PI: 4.818
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05647.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-2977135259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                      D+++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp+ v++tY+ eHnh+
  Zmw_sc05647.1.g00060.1.sm.mkhc  77 TDEWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRLDPDKVIVTYSFEHNHS 135
                                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.21771137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-2973135IPR003657WRKY domain
SuperFamilySSF1182901.7E-2474135IPR003657WRKY domain
SMARTSM007744.6E-3576136IPR003657WRKY domain
PfamPF031061.6E-2578134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDSEWSDGAA ASSPTESGCE GKVGAGDGAS TDCPGSPATA PAASGRRRSA NKRVVTVPLA  60
DVSGPRPKGV GEGNTSTDEW AWRKYGQKPI KGSPFPRAYY RCSSSKGCPA RKQVERSRLD  120
PDKVIVTYSF EHNHSGAVPR VQNRQVIPKP KAQTVPPEPA VESVSVGNMH DVAATATAAT  180
CAGALATGGN SGAGSVEVHD DFRWLYDGVS VTSSTSPSDA DAADDMLYGS MFFGAAVSEP  240
APLPDEFGDV GAWFGAGEAA EEDAMFAGLG ELPECAMVFR RHAGDGLAMA GAGMKVEQPG  300
GGTAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-17781341671WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814691.11e-118probable WRKY transcription factor 65
TrEMBLA0A3L6SUP71e-130A0A3L6SUP7_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Ea02968.1.p1e-117(Panicum virgatum)
STRINGSi002365m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341