PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05650.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 365aa MW: 38620.4 Da PI: 8.9129

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05650.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	128	174	1	50
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 +r++h ++Er RR+++N+ ++ Lr+++ ++ + ++ + a+i A +Y Zmw_sc05650.1.g00040.1.sm.mk 128 QRMTHIAVERSRRKQMNEHLAVLRSVMLPS---YVQRGDQASIIGGALNY 174 79*************************9...99******9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.22E-9	126	183	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-10	126	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.07E-12	126	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.325	127	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-7	128	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-5	133	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MALEGVVSCK RRIGFWSIAA APGARGWNWP HAYGGITEGA MDLEGASATT SFWDVGASSA 60 ALVPEAGEPA GSSAAPPPAQ YSGLGGNIAA GAAEFAQEGA APMSPLLTGR RKRRRARSVK 120 NREEAESQRM THIAVERSRR KQMNEHLAVL RSVMLPSYVQ RGDQASIIGG ALNYDKELEQ 180 LIQTLQARKH ARDNLSLGVD VAAAVPFAGF FTFPQYAMSG TGGSPTATNT VSVNCDSHGN 240 DANGNDTPAA GSRQSSVADI EMTMVESHAN LKVLSRRRSR QLLRVVAGLQ GHRLTVLHLN 300 VTSAGPMALY SIGLKVEDDC RLSSADDIAA AVHRIVEAVE REEGAAGRRR ARVIGVTECS 360 SSSMS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MALEGVVSCK RRIGFWSIAA APGARGWNWP HAYGGITEGA MDLEGASATT SFWDVGASSA  60
ALVPEAGEPA GSSAAPPPAQ YSGLGGNIAA GAAEFAQEGA APMSPLLTGR RKRRRARSVK  120
NREEAESQRM THIAVERSRR KQMNEHLAVL RSVMLPSYVQ RGDQASIIGG ALNYDKELEQ  180
LIQTLQARKH ARDNLSLGVD VAAAVPFAGF FTFPQYAMSG TGGSPTATNT VSVNCDSHGN  240
DANGNDTPAA GSRQSSVADI EMTMVESHAN LKVLSRRRSR QLLRVVAGLQ GHRLTVLHLN  300
VTSAGPMALY SIGLKVEDDC RLSSADDIAA AVHRIVEAVE REEGAAGRRR ARVIGVTECS  360
SSSMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	114	RKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973718.1	1e-101	transcription factor bHLH94
TrEMBL	A0A0A9VPC8	1e-124	A0A0A9VPC8_ARUDO; Uncharacterized protein
STRING	Si013925m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156