PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05652.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 285aa MW: 32295.5 Da PI: 8.0488

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05652.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.6	3e-50	11	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra 77 lppGfrF+Ptd+e++v+yLk+k++++ ++++++i++vdiyk++Pw+Lp k+v +e ew+fFs+r++ky++g r+nr+ Zmw_sc05652.1.g00030.1.sm.mk 11 LPPGFRFQPTDQEIIVCYLKNKIAATAttaTTVTSIIADVDIYKFDPWELPeKAVVCGEGEWFFFSPRQRKYPNGCRPNRS 91 79******************99998565555568***********656666888***************** PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + sgyWkatg+dk++l+ +++ +g+kk Lvfy+gr+pkg+kt+Wvmheyrl Zmw_sc05652.1.g00030.1.sm.mk 92 AGSGYWKATGTDKPILAGgGSRCIGVKKALVFYQGRSPKGTKTEWVMHEYRL 143 *************856677*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-57	8	172	IPR003441	NAC domain
PROSITE profile	PS51005	58.108	11	174	IPR003441	NAC domain
Pfam	PF02365	4.8E-26	12	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDEGMGGICQ LPPGFRFQPT DQEIIVCYLK NKIAATATTA TTVTSIIADV DIYKFDPWEL 60 PEKAVVCGEG EWFFFSPRQR KYPNGCRPNR SAGSGYWKAT GTDKPILAGG GSRCIGVKKA 120 LVFYQGRSPK GTKTEWVMHE YRLLDADDHI VMRRKDSANS MRLDDWVLCR SRNKGSFVVG 180 LPDDMAPADQ SRSSPARTRA EHVEDWIDDQ LLQCLINSNE PELDHSMINR KRKNNHLSFQ 240 AMPNYSYKRA NNGMLNSTTP FRETSFSVSE TDELFYHSKY LISTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-60	11	176	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-60	11	176	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-60	11	176	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-60	11	176	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	7e-60	11	176	20	170	NAC domain-containing protein 19
3swm_B	7e-60	11	176	20	170	NAC domain-containing protein 19
3swm_C	7e-60	11	176	20	170	NAC domain-containing protein 19
3swm_D	7e-60	11	176	20	170	NAC domain-containing protein 19
3swp_A	7e-60	11	176	20	170	NAC domain-containing protein 19
3swp_B	7e-60	11	176	20	170	NAC domain-containing protein 19
3swp_C	7e-60	11	176	20	170	NAC domain-containing protein 19
3swp_D	7e-60	11	176	20	170	NAC domain-containing protein 19
4dul_A	7e-60	11	176	17	167	NAC domain-containing protein 19
4dul_B	7e-60	11	176	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200711.1	7e-96	NAC transcription factor 32-like
Swissprot	A0SPJ9	1e-68	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A077RZD5	7e-96	A0A077RZD5_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6GUF8	6e-96	A0A3B6GUF8_WHEAT; Uncharacterized protein
STRING	EMT29965	2e-92	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]