PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05670.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 168aa MW: 18724.4 Da PI: 8.9122

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05670.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.5	3.1e-17	2	44	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i++k + qvtfskR+ i+KKA+E+ Cda+vav+ifs+ gk Zmw_sc05670.1.g00010.1.am.mk 2 IQDKDRCQVTFSKRKSRIFKKASEIILRCDARVAVVIFSKAGK 44 899*************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.026	1	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.71E-17	2	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-18	2	46	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.2E-10	2	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-6	14	29	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-6	29	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
PIQDKDRCQV TFSKRKSRIF KKASEIILRC DARVAVVIFS KAGKPYALGS PSVDDVLRLV 60 DVHEDGAPAQ QLSSDVVCER GVPAQQVTAV ADRAAAEAMV RQHEDTKALV AAEQLRVRTV 120 GDRVMQAAAG RRFWWEADVE KLGAAELPEF TRALQQLRDN LHRHIERV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811768.1	1e-49	agamous-like MADS-box protein AGL62
TrEMBL	A0A1E5UM65	3e-46	A0A1E5UM65_9POAL; Uncharacterized protein
TrEMBL	A0A2S3HIR9	2e-48	A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DXP1	2e-48	A0A2T7DXP1_9POAL; Uncharacterized protein
STRING	Pavir.J16245.1.p	1e-45	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2833	30	88