PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05682.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 225aa MW: 24330.6 Da PI: 4.5013

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05682.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.8	1.2e-10	129	175	42	90
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +grsW ++ + k ++ + + W++Fv +n+L++gD +vF+l+g +e+ Zmw_sc05682.1.g00070.1.sm.mk 129 RGRSWATSYCGDLKCKK--FDGAWRDFVVDNRLRVGDACVFELVGADET 175 69*****66666555..899*******************987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-15	93	178	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-13	94	177	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.13E-11	97	171	No hit	No description
PROSITE profile	PS50863	9.545	129	183	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-8	129	175	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
METPASSACP WKQLPDASAK WELDAGIKPK LPDPCPTFKL DAGVKPKLPD ACATFKPEAG 60 VEPKPEPCEE DAPPLSPLAG DAADDDWEIT PVSGNHPFFT TVMSQSHVQK SLQLRHLPAA 120 RVPAVLLCRG RSWATSYCGD LKCKKFDGAW RDFVVDNRLR VGDACVFELV GADETEVEAE 180 AEARRNGGEK AVVVFRVQVL CGGLPEEITS KGATSDEPLV IVDYD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811196.1	2e-69	B3 domain-containing protein Os06g0112300-like isoform X1
Swissprot	Q9LHY9	3e-36	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A2T8JF47	7e-68	A0A2T8JF47_9POAL; Uncharacterized protein
STRING	Pavir.Db02470.1.p	7e-64	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]