PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05687.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 472aa MW: 50126.8 Da PI: 10.4062

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05687.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.2	6.1e-18	323	369	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdr N+++ L+el+P++ K +Ka+iL +A+eY+ksLq Zmw_sc05687.1.g00030.1.am.mk 323 VHNMSERRRRDRFNEKIRALQELVPHC-----SKTDKASILDEAIEYLKSLQ 369 6***********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.00E-18	314	373	No hit	No description
SuperFamily	SSF47459	7.98E-21	317	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.419	319	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-15	323	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-21	323	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-18	325	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MVTGLSVTAS PLVASRGPFV AGGGMAASTT YSRRVCCVVS SLSMCTLCPL PIPGDLIVTH 60 PKPRRISNGD VNSSSIQGIK PRQPTGSRVR PLNRRTQFVG SLFIAGYCCA KLQRALASST 120 RRGAAGSKKW LLAMDGGARP APSQKRTFPP DGELVELLWR NGAVVARSQA QGHNYHQREV 180 VRRGPSGGNT GASGVTEDAA WLPDPNALGG DTDTAASAFW PPPPATSGGA GSSRTTGGEV 240 GSSFCGSNNL VTAALLRTGA STSGWTESGA LLRRSRDEVD GRGEVVFSIL ATGYACFDSV 300 RLDADFDETR RPASKRRTRS AEVHNMSERR RRDRFNEKIR ALQELVPHCS KTDKASILDE 360 AIEYLKSLQM QVQIMWMTTG MSPMMIPGGH QQLMGTGLNS SSMPPAAHVL SQMQRVAPFM 420 NNPLPSQMPG VSSAATGAQN AASQVQKNRV GDPRNPFFHP DDAPAATAEA IV

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MVTGLSVTAS PLVASRGPFV AGGGMAASTT YSRRVCCVVS SLSMCTLCPL PIPGDLIVTH  60
PKPRRISNGD VNSSSIQGIK PRQPTGSRVR PLNRRTQFVG SLFIAGYCCA KLQRALASST  120
RRGAAGSKKW LLAMDGGARP APSQKRTFPP DGELVELLWR NGAVVARSQA QGHNYHQREV  180
VRRGPSGGNT GASGVTEDAA WLPDPNALGG DTDTAASAFW PPPPATSGGA GSSRTTGGEV  240
GSSFCGSNNL VTAALLRTGA STSGWTESGA LLRRSRDEVD GRGEVVFSIL ATGYACFDSV  300
RLDADFDETR RPASKRRTRS AEVHNMSERR RRDRFNEKIR ALQELVPHCS KTDKASILDE  360
AIEYLKSLQM QVQIMWMTTG MSPMMIPGGH QQLMGTGLNS SSMPPAAHVL SQMQRVAPFM  420
NNPLPSQMPG VSSAATGAQN AASQVQKNRV GDPRNPFFHP DDAPAATAEA IV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	331	KRRTRSAEVHNMSERRRR
2	327	332	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955437.1	1e-123	transcription factor PIF4
Swissprot	Q10CH5	9e-68	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	K3ZTU8	1e-128	K3ZTU8_SETIT; Uncharacterized protein
STRING	Si030028m	1e-129	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]