PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05712.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 19625.7 Da    PI: 10.0556
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05712.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.6e-241260250
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  rien   rqvtfskRr g+ KKA EL vLCd++va+++fs +gk+++++
  Zmw_sc05712.1.g00060.1.sm.mk 12 RIENAVSRQVTFSKRRRGLAKKARELAVLCDVDVALLLFSDKGKFHDFA 60
                                  8**********************************************97 PP
2K-box50.96.6e-18621103482
                         K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                     R+l+Ge+L++L+++e qqLeqq+e +l++iRs+K+++l+eq + l k
  Zmw_sc05712.1.g00060.1.sm.mk  62 HGRNLMGEQLDTLTVREVQQLEQQIEIALRNIRSRKEKMLMEQKSILEK 110
                                   66*****************************************887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.553363IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-28362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-24471IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-25525IPR002100Transcription factor, MADS-box
PfamPF003193.8E-231259IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-254061IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.58142141IPR002487Transcription factor, K-box
PfamPF014863.9E-1456109IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGRGRGRVEV RRIENAVSRQ VTFSKRRRGL AKKARELAVL CDVDVALLLF SDKGKFHDFA  60
AHGRNLMGEQ LDTLTVREVQ QLEQQIEIAL RNIRSRKEKM LMEQKSILEK VSVHPTSKLA  120
LLYIDFLQLN LLIIWLTNHS SDDSDEPGPA STAPPERPSD LPWWMLRPSA EG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662068.16e-57MADS-box transcription factor 14 isoform X1
SwissprotQ2QQA31e-40MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A3L6G5672e-63A0A3L6G567_MAIZE; MADS-box transcription factor 20
STRINGSb08g015555.11e-46(Sorghum bicolor)