PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05750.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 580aa    MW: 65918.9 Da    PI: 5.7817
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05750.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-161542173398
                                     -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                     +++l+ +d++  +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e +v+v+r
  Zmw_sc05750.1.g00030.1.am.mkhc 154 TQELITKDLHESEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLTAGDAFVYL--RSETGEQRVGVRR 217
                                     458999******************************************999..4477778999997 PP
2Auxin_resp89.56.1e-30243324183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                                     a+ha++t+s+F v+Y+Pr+s+s+++v+++k+ ++ k+ ++ G Rfkm+fe++d++ +++sGt+v+  dl p +W++S+W
  Zmw_sc05750.1.g00030.1.am.mkhc 243 ASHAIKTNSIFLVYYRPRSSQSQYIVSLNKYIQSSKIGFTDGLRFKMSFEGDDVPVKKFSGTIVDKGDLAP-QWKGSEW 320
                                     789********************************************************************.******* PP

                      Auxin_resp  80 rsLk 83 
                                     + Lk
  Zmw_sc05750.1.g00030.1.am.mkhc 321 KTLK 324
                                     *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.8E-4136219IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-20143246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-20147232IPR015300DNA-binding pseudobarrel domain
CDDcd100174.41E-9151217No hitNo description
PfamPF023621.1E-13152217IPR003340B3 DNA binding domain
PROSITE profilePS508639.728156219IPR003340B3 DNA binding domain
PfamPF065077.5E-26243324IPR010525Auxin response factor
PfamPF023091.1E-6474518IPR033389AUX/IAA domain
PROSITE profilePS5174517.37480563IPR000270PB1 domain
SuperFamilySSF542771.18E-5482556No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
EPGASCRPKK PRPLPRRALA MAQARDLELF AELWRACAGP LVELPQRDER VFYFLQGHLE  60
QLQEPTDPAL LAEQIKMFQV PNKILCKVVN VELKVNSWIT LALFNLLLQS RFLNYYTSTS  120
ILVSAAQAET ETDEMFAQIT LQPDPDDMSM PTPTQELITK DLHESEWRFK HIYRGQPRRH  180
LLTTGWSTFV TSKKLTAGDA FVYLRSETGE QRVGVRRLVQ KKSTMPASVI SSQSMRLGVL  240
ASASHAIKTN SIFLVYYRPR SSQSQYIVSL NKYIQSSKIG FTDGLRFKMS FEGDDVPVKK  300
FSGTIVDKGD LAPQWKGSEW KTLKVQWDDA ANFSGPERVS CWEIEPFDAS ALSIKIPMQP  360
STKTKRSRET AESLDVQELE PAQEFWLSGS GRAQQHEKIA EEPSSKLSCN TALCSYRTDE  420
VTPDFTNAVE EKKEPVLLRL FGVDMINHIK NAASTDNIPI GAGEKLTRAD CSYEDSGRLS  480
AFSKVQMHGN AVGRSVDLAN FDRYEQLIGE LEHMFEIKEL NSKEKWKVAF TDDDGATIEI  540
EDNRPWLEFR QVVKKIVIYP IEDWRKVEPG PEEEDLKTEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1032935419362Auxin response factor 1
4ldw_A1e-1032935419362Auxin response factor 1
4ldw_B1e-1032935419362Auxin response factor 1
4ldx_A1e-1032935419362Auxin response factor 1
4ldx_B1e-1032935419362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816439.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A0D9Y5S50.0A0A0D9Y5S5_9ORYZ; Auxin response factor
STRINGSb03g000530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]