PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05829.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 555aa MW: 61179.7 Da PI: 8.993

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05829.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.5	6.2e-07	316	338	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F r+++L+ H++ H Zmw_sc05829.1.g00020.1.am.mk 316 PCPDCGEIFVRQESLQMHQSIrH 338 7******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.1E-4	314	334	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.141	315	339	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	315	338	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.15E-16	340	554	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.4E-11	343	554	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MGTVGGGLEQ RRRVVAVSPA LFLLGSWCFL PSNKFMIQHE KLGRTRLQKQ PVCSYHNNRL 60 VCSGSGRSWP IMSTLVLALL FSFWWCLLAT IDDNQRLAWR GRGRNQEPKK QHHCHHMLSM 120 PLARGSQQQL ASCSRVPTMV EPAAARNSTA TKKSKVKQRQ CTEPPPESPS HRLVALKSLF 180 SCRNSHGHAP DSSCKGTSSK KQQQLACSSA PSICHQLKDN EQVKVKPPTD AAGDPCKRRA 240 SVSGSSERRV KKPLSEVSDN KLRQGGGGSS SSSSTGGGSF RAGMQLRRLS GCYECHMVVD 300 PIFRDSSSMR ATTICPCPDC GEIFVRQESL QMHQSIRHAV CELGSDDTSR NIIEIIFQSS 360 WLKKQSPVCR VERILKVHNS ARTLARFEDY REAVKAKAKK KHHPRCTADG NELLRFHCAA 420 LGCALGLHGA THLCGACPTC AIIRDGFFDN SDGIRTMATS GRAHDAAVPE AGTTEERSRA 480 MLVCRVIAGR VKRPSNHHDD DQQQEQEEVR AEADGEEEEE YESVAGSAGV YSNMEELLVF 540 NSKAILPCFV VIYKA

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MGTVGGGLEQ RRRVVAVSPA LFLLGSWCFL PSNKFMIQHE KLGRTRLQKQ PVCSYHNNRL  60
VCSGSGRSWP IMSTLVLALL FSFWWCLLAT IDDNQRLAWR GRGRNQEPKK QHHCHHMLSM  120
PLARGSQQQL ASCSRVPTMV EPAAARNSTA TKKSKVKQRQ CTEPPPESPS HRLVALKSLF  180
SCRNSHGHAP DSSCKGTSSK KQQQLACSSA PSICHQLKDN EQVKVKPPTD AAGDPCKRRA  240
SVSGSSERRV KKPLSEVSDN KLRQGGGGSS SSSSTGGGSF RAGMQLRRLS GCYECHMVVD  300
PIFRDSSSMR ATTICPCPDC GEIFVRQESL QMHQSIRHAV CELGSDDTSR NIIEIIFQSS  360
WLKKQSPVCR VERILKVHNS ARTLARFEDY REAVKAKAKK KHHPRCTADG NELLRFHCAA  420
LGCALGLHGA THLCGACPTC AIIRDGFFDN SDGIRTMATS GRAHDAAVPE AGTTEERSRA  480
MLVCRVIAGR VKRPSNHHDD DQQQEQEEVR AEADGEEEEE YESVAGSAGV YSNMEELLVF  540
NSKAILPCFV VIYKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824982.1	1e-162	uncharacterized protein LOC112900370
TrEMBL	A0A2S3IBV1	1e-160	A0A2S3IBV1_9POAL; Uncharacterized protein
STRING	GRMZM2G136494_P01	1e-157	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80