PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05849.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 841aa MW: 89043.1 Da PI: 8.892

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05849.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.6e-16	584	630	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Zmw_sc05849.1.g00010.1.am.mk 584 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 630 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.6E-20	577	639	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-17	577	634	No hit	No description
SuperFamily	SSF47459	4.32E-20	578	640	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.006	580	629	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-13	584	630	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-17	586	635	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MNPRHGRVAT HGRNNKRWTG DGDARETGQD RTGSRRTSEL ARAPTGQDAP PVGVRWPGER 60 QRAREGAGNQ RSASRHGGGG WTYGTGANQK PGSTGSRIWR GSNASASRDA RGQLDFAGRP 120 VGAGRPLSPR AGIHAGRCRR RDTFSAGSLT NEFLAPLTSP CNRNTNGWVF PTCPPLPADP 180 SQWRHLLGFL GLGWWRVALN NSPRPLPLLV SILNLHTPNA TVPAPAPTAV LSRRAAPSPV 240 THLSPRQPPS RRCAVSPLVT RRNRPGDELA ELLWDSNCPA LRTTPHFPAA APFQPFTCSA 300 AGSSRANELL NKRHAVGAMD DDVAGLGGIP AVHHDHDHDA VPWLHCPVID DGDSDTAPLP 360 PEYCAGLLSP GYPGLHALPD PTPTVSDIAR SSSTGGAVVV PATRAVTPEA APAQPQPSAA 420 GEGVMNFTFF SRPLQRLQPS AAVAPPPSNL LESTTAAQTA ASRLRNTPLF SEQRMAWLQP 480 PKGPPRATAG APPATDRHHH AEAAATVTQN RMQQPPDARP PDTTAAVTTS SVCSGNGDRS 540 HDKRSSHHPT AECSVSPDED MDDEPGAVGR PTTRGTKRSR TAEVHNLSER RRRDRINEKM 600 RALQELIPNC NKIDKASMLE EAIEYLKTLQ LQVQLMSMGT GLCVPAAPML MQMQMPLVAP 660 PFPHLGMGLG FGAVGFDVLP RFAAAQFPCP VMPPGAVFGM PGQIVPSPLA PFAHVNGAAT 720 VEHREAAAAA APAPPGGGAA AGDRQPSVPV PLQATIDQNH HFFSGRPEAA APEADVTADD 780 AAYPRAVADR MHPWSCAAEF GLAAREAGVD LGSESLAAVS MRRYAESLLQ GVASRVREQA 840 L

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MNPRHGRVAT HGRNNKRWTG DGDARETGQD RTGSRRTSEL ARAPTGQDAP PVGVRWPGER  60
QRAREGAGNQ RSASRHGGGG WTYGTGANQK PGSTGSRIWR GSNASASRDA RGQLDFAGRP  120
VGAGRPLSPR AGIHAGRCRR RDTFSAGSLT NEFLAPLTSP CNRNTNGWVF PTCPPLPADP  180
SQWRHLLGFL GLGWWRVALN NSPRPLPLLV SILNLHTPNA TVPAPAPTAV LSRRAAPSPV  240
THLSPRQPPS RRCAVSPLVT RRNRPGDELA ELLWDSNCPA LRTTPHFPAA APFQPFTCSA  300
AGSSRANELL NKRHAVGAMD DDVAGLGGIP AVHHDHDHDA VPWLHCPVID DGDSDTAPLP  360
PEYCAGLLSP GYPGLHALPD PTPTVSDIAR SSSTGGAVVV PATRAVTPEA APAQPQPSAA  420
GEGVMNFTFF SRPLQRLQPS AAVAPPPSNL LESTTAAQTA ASRLRNTPLF SEQRMAWLQP  480
PKGPPRATAG APPATDRHHH AEAAATVTQN RMQQPPDARP PDTTAAVTTS SVCSGNGDRS  540
HDKRSSHHPT AECSVSPDED MDDEPGAVGR PTTRGTKRSR TAEVHNLSER RRRDRINEKM  600
RALQELIPNC NKIDKASMLE EAIEYLKTLQ LQVQLMSMGT GLCVPAAPML MQMQMPLVAP  660
PFPHLGMGLG FGAVGFDVLP RFAAAQFPCP VMPPGAVFGM PGQIVPSPLA PFAHVNGAAT  720
VEHREAAAAA APAPPGGGAA AGDRQPSVPV PLQATIDQNH HFFSGRPEAA APEADVTADD  780
AAYPRAVADR MHPWSCAAEF GLAAREAGVD LGSESLAAVS MRRYAESLLQ GVASRVREQA  840
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	588	593	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662938.1	1e-135	transcription factor APG isoform X2
Swissprot	Q0JNI9	1e-69	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A0A9P987	1e-159	A0A0A9P987_ARUDO; Uncharacterized protein
STRING	GRMZM2G062541_P01	1e-135	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]