PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05859.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 187aa MW: 20782.3 Da PI: 9.3607

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05859.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	123	168	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+I+ Lq Zmw_sc05859.1.g00040.1.sm.mkhc 123 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHINGLQ 168 689*******************7....688**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.367	117	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-15	120	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.12E-11	121	172	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-14	122	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-12	123	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-10	123	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKPSSHLNFT RAQQQAAGSS GHLTQMSEDG RAFPPGRIRG DRSSGESSGA ASRSFAGGFS 60 IVGPWEESRD IIVTLGAYDP QFSDAIASSA LERAGMDRYM QLQQDQVPFK VRAKRGCATH 120 PRSIAERERR TRISEKLRKL QELVPNMDKQ TSTADMLDLA VEHINGLQSE LQNLKNEQEK 180 CTCCRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808991.1	5e-96	transcription factor bHLH128-like
Swissprot	Q8H102	4e-46	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A1E5USQ6	1e-100	A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRING	Pavir.Aa01423.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]