PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05892.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 138aa MW: 14982.7 Da PI: 9.5444

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05892.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.9	3.6e-31	71	124	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++ave+LGG+++AtPk +l lm+vkgL++ hvkSHLQ+YR+ Zmw_sc05892.1.g00030.1.sm.mk 71 PRLRWTPELHLRFLRAVERLGGQDRATPKLVLLLMNVKGLSIGHVKSHLQMYRS 124 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-29	67	125	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.951	67	127	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-15	68	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	70	126	IPR006447	Myb domain, plants
Pfam	PF00249	9.3E-10	72	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MEEISSKSFA SSKNQGDPEE GDAAADAPHY CHEGSSSHSS SVDMEVAAGG DSSRKTAASS 60 SVRPYVRSKN PRLRWTPELH LRFLRAVERL GGQDRATPKL VLLLMNVKGL SIGHVKSHLQ 120 MYRSKKIDDS GQGKSTDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	72	126	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	72	126	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	72	126	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	72	126	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317375.1	6e-53	putative Myb family transcription factor At1g14600
Refseq	XP_021317376.1	6e-53	putative Myb family transcription factor At1g14600
Refseq	XP_021321607.1	3e-50	uncharacterized protein LOC8064764
TrEMBL	C5YQ15	8e-49	C5YQ15_SORBI; Uncharacterized protein
STRING	Sb08g000510.1	1e-50	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71