PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05932.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 220aa MW: 23267.7 Da PI: 8.4996

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05932.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.5	6.5e-22	174	220	1	47
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs 47 +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++ g++qrfCqqCs Zmw_sc05932.1.g00010.1.am.mk 174 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVTAGGKQQRFCQQCS 220 6*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.4E-24	167	220	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	19.931	172	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-21	172	220	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-16	175	220	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MMSGRMNAVT SADGDDFPFA PSMQPPPPPP YVGFDPSVPG GGMGPQRAGG MPHHLYDDLD 60 LAAAAAMQFQ EAPHHHQLLT LPSSLAAPMA PPPPVPMSLQ MPMPGLHGDV YPALGMVKRE 120 GGGGAEGGRI GLNLGRRTYF SPGDMLAVDR LLMRSRLGGV FGLGFGGAHH QPPRCQAEGC 180 KADLSGAKHY HRRHKVCEYH AKASVVTAGG KQQRFCQQCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	5e-17	175	220	6	51	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965676.1	2e-82	squamosa promoter-binding-like protein 10
Swissprot	A2YFT9	7e-69	SPL10_ORYSI; Squamosa promoter-binding-like protein 10
Swissprot	Q0DAE8	7e-69	SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBL	A0A0A9G6E5	2e-93	A0A0A9G6E5_ARUDO; Sbp3
STRING	Si006559m	9e-82	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2375	35	93