PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05953.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 221aa    MW: 24944.1 Da    PI: 9.8977
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05953.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-17136183148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W +eEd  l d+v+++G g+Wk++    g++R++k+c++rw+++l
  Zmw_sc05953.1.g00040.1.am.mk 136 KGSWDPEEDAVLRDYVQEHGEGSWKLVQINTGLNRCGKSCRLRWHNHL 183
                                   799*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.768131187IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-22132186IPR009057Homeodomain-like
SMARTSM007171.7E-13135185IPR001005SANT/Myb domain
PfamPF002493.4E-15136183IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-20137213IPR009057Homeodomain-like
CDDcd001672.27E-10138183No hitNo description
PROSITE profilePS500905.273184221IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-9187217IPR009057Homeodomain-like
SMARTSM0071740188221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGSLACIAHA PSPEPENSEQ TSRARIADGR KWNSRFPRPC AATPQRNFPT LQNSSISKST  60
SQHRRRLIRF PLPALGSSSL ALDPYGRARS LDGNLSFLTA DTMVKNKKEE EEKVETNSDG  120
GIDDAPAPPV APKLNKGSWD PEEDAVLRDY VQEHGEGSWK LVQINTGLNR CGKSCRLRWH  180
NHLKPHLKKG RFDDEEVEKI LYMHRLWGNK WAKMAKHQDK A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-15132216386B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA2WW874e-31GAM1_ORYSI; Transcription factor GAMYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6208022