PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05979.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 171aa MW: 18854.6 Da PI: 8.8386

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05979.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.9	1.6e-12	15	106	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 ffk l ++++ l+lp kfa g ++ t++l +e W+v+l ++++++l++GW++ ++ +L eg + Zmw_sc05979.1.g00030.1.sm.mk 15 FFKLL--LPGMAKNELRLPAKFAGVLGDR--RDLTVRLSSEGAmPLWDVEL--VTSGDGVYLGRGWRQLARTYDLGEGHLL 89 78888..67788888******666655..777999999655599*..999999****************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 vF++d+ + l+v+vf+ Zmw_sc05979.1.g00030.1.sm.mk 90 VFRYDN--AAVLNVTVFDP 106 *975..66679999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.674	13	107	IPR003340	B3 DNA binding domain
CDD	cd10017	5.72E-13	13	105	No hit	No description
SuperFamily	SSF101936	7.26E-18	14	109	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-17	14	109	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.9E-9	15	105	IPR003340	B3 DNA binding domain
SMART	SM01019	6.5E-10	15	107	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEQGIADLPK AEFEFFKLLL PGMAKNELRL PAKFAGVLGD RRDLTVRLSS EGAMPLWDVE 60 LVTSGDGVYL GRGWRQLART YDLGEGHLLV FRYDNAAVLN VTVFDPSTCR KQYPRAGGAG 120 SAGAGRNAPH VNEPAPFAVT LRNCNLSTKQ NQYLVSEHCH RLGILAWRSL I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985224.1	6e-47	B3 domain-containing protein Os03g0212300
Swissprot	Q10Q26	3e-38	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A0A0A9SID0	1e-60	A0A0A9SID0_ARUDO; Uncharacterized protein
STRING	Pavir.Ia04671.1.p	4e-47	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]