PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05979.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 125aa MW: 14614.4 Da PI: 6.3907

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05979.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.1	1.9e-14	11	82	15	87
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + +p +f ++hg+ ++ +++l+ grsW+v+l+ r ++r+ ++ GW +F+ +ngL++gD++ F+++++ Zmw_sc05979.1.g00040.1.sm.mk 11 MQNVPVEFQDAHGYARRR--QVVLR-MGGRSWTVNLKRgkRPFGDRTAFKYGWHQFCVDNGLEVGDTCFFHVVHE 82 457899999999988665..45554.599*****6644444555***********************8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.082	1	94	IPR003340	B3 DNA binding domain
CDD	cd10017	1.17E-12	1	78	No hit	No description
SMART	SM01019	0.0074	2	89	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.87E-16	7	82	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.2E-21	7	82	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.6E-12	13	83	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MPWHASRACC MQNVPVEFQD AHGYARRRQV VLRMGGRSWT VNLKRGKRPF GDRTAFKYGW 60 HQFCVDNGLE VGDTCFFHVV HERKALKEEE EEDDDDVKEE RVKEEEDDGH ALKVVSMNIT 120 PHVAW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796563.1	1e-39	B3 domain-containing protein Os03g0212300-like
Refseq	XP_025796564.1	1e-39	B3 domain-containing protein Os03g0212300-like
Swissprot	Q10Q26	5e-29	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A0A3L6THU7	2e-39	A0A3L6THU7_PANMI; B3 domain-containing protein
STRING	Pavir.Ia04671.1.p	5e-38	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]