PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05997.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 167aa    MW: 18707.4 Da    PI: 8.8412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05997.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10113160455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +hn +Er RR++i +++  L +l+P +    +k   Ka +L +  +Y++sLq
  Zmw_sc05997.1.g00020.1.sm.mkhc 113 SHNLAERLRRKKISERIKLLHDLVPRC----NKVTGKAVMLDEISKYVQSLQ 160
                                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-14106160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-13107160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.087109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7113160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.87E-8113160No hitNo description
SMARTSM003534.5E-6115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MLMIELMTIF DSLKRVEAYL DAHGGTSSQN VQMRDGFSGG VKKSKGMCEC VTLLQPMGDQ  60
QTEGSSQPER NFVEEEKRMI SPKSQIKEDS SGGDGIKEDY VHVRAKRDQP TNSHNLAERL  120
RRKKISERIK LLHDLVPRCN KVTGKAVMLD EISKYVQSLQ PSGGVLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981901.14e-65transcription factor bHLH49
RefseqXP_004981902.14e-65transcription factor bHLH49
RefseqXP_022678584.14e-65transcription factor bHLH49
SwissprotQ9CAA97e-29BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3L6S4S42e-63A0A3L6S4S4_PANMI; Transcription factor bHLH49-like
TrEMBLK4ACS89e-64K4ACS8_SETIT; Uncharacterized protein
STRINGSi036685m1e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]