PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06022.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 184aa    MW: 20346.2 Da    PI: 11.151
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06022.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.81.3e-312884158
                       CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                                    +e+++VNaKQy++Il+RRq+Rakle+++kl  k r+pylheSRh+hA++R RgsgGrF
  Zmw_sc06022.1.g00020.1.sm.mkhc 28 EETIFVNAKQYHAILRRRQARAKLEAQNKL-VKVRRPYLHESRHRHAMKRVRGSGGRF 84
                                    689***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-362687IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.2622787IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-243052IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-273084IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068603252IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-246184IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQDQSMVHPQ INGTANSRLP LPIEPAAEET IFVNAKQYHA ILRRRQARAK LEAQNKLVKV  60
RRPYLHESRH RHAMKRVRGS GGRFLNKKEL QEQQQKAVPS LKTPTGGVSK MGDVGNRCTE  120
SSTPWLPSTP TSTGISSVSN GGGMLAHQEH INFSTFNPSM GFNAQNGGEK MAANGVCYRT  180
PIMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2428104272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16877RHRHAMKRVR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984044.17e-76nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_004984045.17e-76nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_004984046.15e-76nuclear transcription factor Y subunit A-4 isoform X2
SwissprotQ9LVJ75e-37NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLA0A0A9LTJ81e-79A0A0A9LTJ8_ARUDO; Uncharacterized protein
TrEMBLA0A0A9R9P15e-80A0A0A9R9P1_ARUDO; Uncharacterized protein
STRINGSi036728m3e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]