PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06024.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 348aa    MW: 39166.5 Da    PI: 4.5321
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06024.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.72.4e-301869103
                                     HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
                    HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                                     +++d++++++isw + g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we++++ F 
  Zmw_sc06024.1.g00030.1.sm.mkhc   1 MVSDPATDSVISWGAGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFI 70 
                                     899*******************************************************999.........********* PP

                                     XXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  88 kgkkellekikrkkse 103
                                     k++k+ll++ikrkk++
  Zmw_sc06024.1.g00030.1.sm.mkhc  71 KDQKHLLKSIKRKKKT 86 
                                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-42183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-29183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-31183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-26183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-83244IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-84557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVSDPATDSV ISWGAGGGSF VIWDSHAFER DLLPRHFKHN HFTSFIRQLN TYGFHKVDPD  60
RWEWANEGFI KDQKHLLKSI KRKKKTSQEA PDPPQAPVKP APGTENIEIG NYGGLEKEVE  120
TLKRDKTLLM QQLVDLRHYQ QSSGLELQNL IQRLHVMEQN QQQMMALLAI VVQNPDFLNQ  180
LVQQQRRNNW WNDDGSKKRR FIALDRGPAA EQENSGAGAP IIQYRSPVPE VSNQAIPVDG  240
GFCATPVESD SSPALAMPMD AETTSNNDDT LGSTRDHFTG SPGLCDWEDV DMDALFKDLD  300
SMDTSAENDA QMEVPLSVDD YPQLERDCQM EAQQNCRNPQ FADVSAEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1818327120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241714.10.0uncharacterized protein LOC100191641
RefseqXP_008669414.10.0uncharacterized LOC100191641 isoform X1
RefseqXP_020404917.10.0uncharacterized LOC100191641 isoform X1
SwissprotQ10PR41e-167HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLB4F9K60.0B4F9K6_MAIZE; Uncharacterized protein
STRINGGRMZM2G118485_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]