PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06044.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26519.7 Da    PI: 6.4084
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06044.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.68.8e-151259249
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  +ien++ r+ tf kRr+g+ K A  LS+L++a+ a+++ s++gk+  +
  Zmw_sc06044.1.g00060.1.am.mk 12 FIENDRDRSLTFFKRRAGLYKAAADLSTLTGARLAIVLESESGKFSSF 59
                                  8*******************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-10162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.512363IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-8525IPR002100Transcription factor, MADS-box
CDDcd001205.29E-16662No hitNo description
SuperFamilySSF554553.4E-15772IPR002100Transcription factor, MADS-box
PfamPF003194.0E-171259IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82540IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-84061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MARRARRSGV SFIENDRDRS LTFFKRRAGL YKAAADLSTL TGARLAIVLE SESGKFSSFG  60
APATDPIVDA FLSGEDPMVY AYASEKQRAT IVELQNEGLR LEKDLVLENQ RRKEFIGMVK  120
ELQESSRVAK FVYDKVEDLD VDELHEMYRE LSHVHQEAQL LLRTTHQDAT VKGPTMDSYT  180
TTHPASSKVG SPNTNMVTIL HRVPDDAPTR TSSTKIGSFF HGATASTEEA SINTSYPQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971997.12e-60transcription factor RLM1
TrEMBLA0A1E5WGP15e-62A0A1E5WGP1_9POAL; Uncharacterized protein
STRINGGRMZM2G375707_P016e-58(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276