PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06051.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 706aa MW: 76848.3 Da PI: 8.2755

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06051.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.9	1.7e-08	491	528	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ qV++WF N R + Zmw_sc06051.1.g00010.1.am.mk 491 FEHflHPYPKDSEKLMLARQTGLSSGQVSNWFINARVR 528 554459******************************88 PP
2	BELL	107.3	9.5e-35	353	424	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai q+ Zmw_sc06051.1.g00010.1.am.mk 353 ERQDLQNKVWALVALLDQVDRKYRHYHHQMQIVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGAQV 424 799*****************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-46	286	422	IPR006563	POX domain
Pfam	PF07526	7.3E-46	293	420	IPR006563	POX domain
PROSITE profile	PS50071	11.904	469	532	IPR001356	Homeobox domain
SMART	SM00389	2.2E-8	472	536	IPR001356	Homeobox domain
CDD	cd00086	2.56E-11	472	533	No hit	No description
SuperFamily	SSF46689	1.45E-16	473	539	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-27	475	538	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-16	489	528	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
LSPPLSKAAA GPIRRQKQRQ SHGPVARFEP ISSSRSVYQA AGFCQPISLP NNRPTVPYRP 60 TALTTHRSDT PSPSAGVGPG IPTDHTWPVL ACWLGSIAHA RRTSSCGPFH KHGSRDDHVT 120 TLLLLLLYPP LSPGNDNRQT VRRHDELVSR TAAFFSTYTN HTDLTVGGNM SYHHYNAYSD 180 SATGGLIPIP ATIAQRVRGY AAHGEDGRDE PAPFVSTREG QASGAEMGLQ TQLLMANATS 240 AAQSQGLSHS LGSQGVPASL YQQYRPAGMA AASLLSPNLA AAASRNAQSN IYIENSKYLK 300 AARELLDEVV SVRHAIKRKG DKNQSKDSGE CTDAEKAGGE HEGNSTTELT ASERQDLQNK 360 VWALVALLDQ VDRKYRHYHH QMQIVMSSFD AVAGAGAARP YTALALQTIS RHFRSLRDAI 420 GAQVQSLRRS LGEKDTAAQT GGLSRLRYID QHLRQQRAMQ QFGMMQQPQH AWRPQRGLPE 480 SAVSVLRAWL FEHFLHPYPK DSEKLMLARQ TGLSSGQVSN WFINARVRLW KPMIEEMYKE 540 EFGAEMDSHS HSENAGNKGK DEAMSSEDHD EFQSPSSAAK HGAGHHTDTF KSEATGTYAN 600 SLNLNHQSAV GSGNGSRLLQ DALAHHRHGG DARFVSYGYM ASHVGGYDGG GSVSLTLGLQ 660 HCDDAGAAPA EQPGLLYGNV GDFEFVNGDE DRQRFGSSKL LHDFVT

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

LSPPLSKAAA GPIRRQKQRQ SHGPVARFEP ISSSRSVYQA AGFCQPISLP NNRPTVPYRP  60
TALTTHRSDT PSPSAGVGPG IPTDHTWPVL ACWLGSIAHA RRTSSCGPFH KHGSRDDHVT  120
TLLLLLLYPP LSPGNDNRQT VRRHDELVSR TAAFFSTYTN HTDLTVGGNM SYHHYNAYSD  180
SATGGLIPIP ATIAQRVRGY AAHGEDGRDE PAPFVSTREG QASGAEMGLQ TQLLMANATS  240
AAQSQGLSHS LGSQGVPASL YQQYRPAGMA AASLLSPNLA AAASRNAQSN IYIENSKYLK  300
AARELLDEVV SVRHAIKRKG DKNQSKDSGE CTDAEKAGGE HEGNSTTELT ASERQDLQNK  360
VWALVALLDQ VDRKYRHYHH QMQIVMSSFD AVAGAGAARP YTALALQTIS RHFRSLRDAI  420
GAQVQSLRRS LGEKDTAAQT GGLSRLRYID QHLRQQRAMQ QFGMMQQPQH AWRPQRGLPE  480
SAVSVLRAWL FEHFLHPYPK DSEKLMLARQ TGLSSGQVSN WFINARVRLW KPMIEEMYKE  540
EFGAEMDSHS HSENAGNKGK DEAMSSEDHD EFQSPSSAAK HGAGHHTDTF KSEATGTYAN  600
SLNLNHQSAV GSGNGSRLLQ DALAHHRHGG DARFVSYGYM ASHVGGYDGG GSVSLTLGLQ  660
HCDDAGAAPA EQPGLLYGNV GDFEFVNGDE DRQRFGSSKL LHDFVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-16	478	536	5	63	Homeobox protein Meis2
4xrm_B	1e-16	478	536	5	63	Homeobox protein Meis2
4xrs_A	9e-17	478	535	1	58	Homeobox protein Meis1
4xrs_B	9e-17	478	535	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797172.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	1e-117	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A1E5W1C9	0.0	A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRING	Si034960m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP901	38	131

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]