PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06063.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 150aa    MW: 16254.6 Da    PI: 8.0354
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06063.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.24.2e-5728122195
                         NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 
                                   vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y+e
  Zmw_sc06063.1.g00010.1.am.mk  28 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIE 108
                                   69******************************************************************************* PP

                         NF-YB  82 plkvylkkyreleg 95 
                                   plkvyl+kyre+ +
  Zmw_sc06063.1.g00010.1.am.mk 109 PLKVYLQKYREVLS 122
                                   ***********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5327126IPR009072Histone-fold
SuperFamilySSF471135.59E-4031128IPR009072Histone-fold
PfamPF008081.5E-283498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.2E-236280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.2E-238199No hitNo description
PRINTSPR006156.2E-23100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MADGPTSPGG GGGSHESGSP RGGGGGGVRE QDRFLPIANI SRIMKKAVPA NGKIAKDAKE  60
TVQECVSEFI SFITSEASDK CQREKRKTIN GDDLLWAMAT LGFEEYIEPL KVYLQKYREV  120
LSKRDGVKTV ELLTTPFIGL VEDIKKSMCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4927119193NF-YB
4awl_B3e-4927119294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4927119294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00300DAPTransfer from AT2G38880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022145604.12e-68nuclear transcription factor Y subunit B-1 isoform X1
SwissprotP252098e-63NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLV4SNQ47e-68V4SNQ4_9ROSI; Uncharacterized protein
STRINGXP_010244998.12e-67(Nelumbo nucifera)
STRINGXP_010253500.12e-67(Nelumbo nucifera)
STRINGXP_010046844.13e-67(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]