PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06101.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 475aa    MW: 50191.2 Da    PI: 5.2068
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06101.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.67.9e-31226284259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Zmw_sc06101.1.g00070.1.sm.mk 226 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 284
                                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925220286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30223286IPR003657WRKY domain
SuperFamilySSF1182903.4E-26223286IPR003657WRKY domain
SMARTSM007741.4E-37225285IPR003657WRKY domain
PfamPF031061.0E-25227284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MCDYFLQRME GDQADGDLTD IVRAGGGVPG NAEVPSTVAE WQLQGEPRLC PPLPPSSEGY  60
AGSTGADVFG DPFFGLGDPF STDYSSGADF LDAMPDAMAK VGFDTAVGCG GGGSGQMLDM  120
SRKPILPRGV QMPAVGLLGP RMLPSPLSPP RAIRPYPPMG GDMVKLGITA GQMAGCAIDA  180
AVVGMQMSSP RSAGGIKRRK NQARKVICIP APTAAGARPT GEVVPSDLWA WRKYGQKPIK  240
GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPTQRN ALAGSTRNHH  300
GKNGGSSSGS KSSQNEKQKQ PNVKEEESKD QATTAATTAS TITTTTSTSP VAAVKEEALA  360
QPAGPEALAR AIDATGAVDH NNMALMDHVF SESYKPMIPE TGQPDDFFSD LAELESDPMS  420
LIFSKEYMEA KPAGGDEDRA NEKAVSKDLD PFEMLDWSNT SSAGSSFEQA SGKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24200287280Disease resistance protein RRS1
5w3x_D1e-24200287280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825027.10.0probable WRKY transcription factor 35
SwissprotQ9SA807e-68WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A1E5VDC20.0A0A1E5VDC2_9POAL; Putative WRKY transcription factor 35
STRINGSi011735m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]