PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06117.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 92aa    MW: 10504.7 Da    PI: 4.7683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06117.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.6e-105492141
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                                    r +WT+ E++++++a +++  + Wk+I +++g  +t  q++
  Zmw_sc06117.1.g00010.1.sm.mkhc 54 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQVR 92
                                    789*****************77.*********.***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-114192IPR009057Homeodomain-like
PROSITE profilePS5129312.7895292IPR017884SANT domain
TIGRFAMsTIGR015571.7E-115292IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-55392IPR009057Homeodomain-like
PfamPF002493.8E-85492IPR001005SANT/Myb domain
CDDcd001679.79E-65692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MVSMSTTSYP LDSSVPGVGG GGGDEEEEAR LRLREDDEEG ARRVRKPYTI TKSRESWTEP  60
EHDKFLEALQ LFDRDWKKIE AYVGSKTVIQ VR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812175.11e-38protein REVEILLE 6-like isoform X1
RefseqXP_025812176.19e-39protein REVEILLE 6-like isoform X2
SwissprotQ8H0W32e-28RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A3L6DFN22e-41A0A3L6DFN2_MAIZE; WAT1-related protein
STRINGPavir.Ca00604.1.p3e-38(Panicum virgatum)
STRINGPavir.J28634.1.p3e-40(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1733589
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]