PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06132.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 198aa MW: 20920.9 Da PI: 7.9535

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06132.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	87.3	4.1e-27	20	198	5	134
YABBY 5 ssseqvCyvqCnfCntilavs.............vPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslke 69 s +eq+Cyv+Cn C+tilavs vP +slfk+vtvrCGhCt+llsvnl+ +a ++l+ ++ Zmw_sc06132.1.g00070.1.am.mk 20 SPTEQLCYVHCNCCDTILAVSdhrcgaerappvgVPCSSLFKTVTVRCGHCTNLLSVNLRGLLlppAGPPAANQLNFGVQS 100 578**************8777777777777779**********************998665556788888777777 PP YABBY 70 e.....................lleelkveeenlksnvekeesastsvssekl.....senedeevp..rvppvir..... 117 + l+e+ + ++++ n ++++as+ ++++ + +++ e+p vp v+r Zmw_sc06132.1.g00070.1.am.mk 101 SllsptsphglldelalqapslLMEQASANLSSITGNSYSSSCASNVPAMSMQpaaakPVQHEPELPakSVPSVNRrkdld 181 68888999999999999998766777777777777777777777666655447776644444444311345577644444 PP YABBY 118 PPekrqrvPsaynrfik 134 PekrqrvPsaynrfik Zmw_sc06132.1.g00070.1.am.mk 182 SPEKRQRVPSAYNRFIK 198 7***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.7E-30	21	198	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MMSSSSSSTA AFPLDHLAPS PTEQLCYVHC NCCDTILAVS DHRCGAERAP PVGVPCSSLF 60 KTVTVRCGHC TNLLSVNLRG LLLPPAGPPA ANQLNFGVQS SLLSPTSPHG LLDELALQAP 120 SLLMEQASAN LSSITGNSYS SSCASNVPAM SMQPAAAKPV QHEPELPAKS VPSVNRRKDL 180 DSPEKRQRVP SAYNRFIK

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155220.1	3e-84	protein YABBY 4-like isoform X1
Swissprot	A2X7Q3	5e-70	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	5e-70	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A3B6QIL1	7e-83	A0A3B6QIL1_WHEAT; Uncharacterized protein
TrEMBL	A0A453P643	7e-83	A0A453P643_AEGTS; Uncharacterized protein
STRING	Traes_6DL_59DB06B9F.1	1e-83	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]