PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06168.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 421aa MW: 46741.5 Da PI: 8.7519

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06168.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	68.5	1.5e-21	11	89	2	80
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 CaaC++ r kC++dCv+apyf e+ ++fa+++ +FGasnv+k+l++ ++ er +a++ l+y A + P G + + Zmw_sc06168.1.g00020.1.sm.mk 11 CAACRHIRWKCEPDCVFAPYFGPEDGEHFAVLEGVFGASNVSKVLADHEPRERVAAIKRLLYLAAENVLAPAGGRWSSV 89 ***********************************************************************99976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.444	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-19	11	89	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MASSSEEAKV CAACRHIRWK CEPDCVFAPY FGPEDGEHFA VLEGVFGASN VSKVLADHEP 60 RERVAAIKRL LYLAAENVLA PAGGRWSSVP WGHGEKPSNQ QMAEAQQAAA TAQASRKQAL 120 MMQYHSRTGF GVPAGHLPSC QATEIQQQQT AAAVVTNAWH QDMMMRQAAA AQNYQALGLQ 180 QQRQNQQLAE GVMHQNHHTA LTAEAAKRAT AADAARVREI DTHLQFLRQA AMEEQYMNRY 240 LRTMMQQTVA DGQQEHHQLR HDRAGQNDAM RPNAMLQRNI ARGLANRQNF EQHIKIQQQY 300 WEKELMMMQK AAANAPAMPG EQPQPQRNHL CCRAKPAVDP AQGPYRCCLS DRLTPRHSSS 360 NRGCSRRQAS PGHFIGVKVG PGRATATRVF SPGNDDDESR HSAFESKGSC RGKEVMNGEN 420 H

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MASSSEEAKV CAACRHIRWK CEPDCVFAPY FGPEDGEHFA VLEGVFGASN VSKVLADHEP  60
RERVAAIKRL LYLAAENVLA PAGGRWSSVP WGHGEKPSNQ QMAEAQQAAA TAQASRKQAL  120
MMQYHSRTGF GVPAGHLPSC QATEIQQQQT AAAVVTNAWH QDMMMRQAAA AQNYQALGLQ  180
QQRQNQQLAE GVMHQNHHTA LTAEAAKRAT AADAARVREI DTHLQFLRQA AMEEQYMNRY  240
LRTMMQQTVA DGQQEHHQLR HDRAGQNDAM RPNAMLQRNI ARGLANRQNF EQHIKIQQQY  300
WEKELMMMQK AAANAPAMPG EQPQPQRNHL CCRAKPAVDP AQGPYRCCLS DRLTPRHSSS  360
NRGCSRRQAS PGHFIGVKVG PGRATATRVF SPGNDDDESR HSAFESKGSC RGKEVMNGEN  420
H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-15	11	89	12	90	LOB family transfactor Ramosa2.1
5ly0_B	3e-15	11	89	12	90	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36363	3	4