PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06178.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 236aa MW: 25576.2 Da PI: 10.8349

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06178.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.2	1e-18	69	112	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i++k + qvtfskR+ gi+KKA+E+ Cda+vav+ifs+ gk Zmw_sc06178.1.g00020.1.am.mk 69 PIQDKDRCQVTFSKRKSGIFKKASEIILRCDARVAVVIFSKAGK 112 699**************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.974	60	120	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.3E-15	60	119	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-12	62	82	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-18	65	126	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-19	70	114	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-12	82	97	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-12	97	118	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MRTPRVPPKL LIYAGPASAR ANKIAVATVS PAGRARRNGR SGSWRARAID LGGAGCGGGV 60 GEGRRRDAPI QDKDRCQVTF SKRKSGIFKK ASEIILRCDA RVAVVIFSKA GKPYALGSPS 120 VDDVLRLVDV HEDGAPAQQL SSDVVCERGV PAQQVTAVAD RAAAEAMVRQ HEDTKALVAA 180 EQLRVRTVGD RVMQAAAGRR FWWEADVEKL GAAELPEFTR ALQQLRDNLH RHIERV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811768.1	3e-49	agamous-like MADS-box protein AGL62
TrEMBL	A0A1E5UM65	1e-45	A0A1E5UM65_9POAL; Uncharacterized protein
TrEMBL	A0A2S3HIR9	7e-48	A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DXP1	7e-48	A0A2T7DXP1_9POAL; Uncharacterized protein
STRING	Pavir.J16245.1.p	2e-45	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2833	30	88