PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06194.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 110aa MW: 12820.7 Da PI: 10.0564

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06194.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	46	70	3	28
SS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIa 28 +W+++E +++a +++G++ Wk+++ Zmw_sc06194.1.g00020.1.am.mkhc 46 KWSKDELTHFYEAYRRHGKD-WKKVM 70 8***************99.**9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.03E-5	46	71	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MGPAKGTQTI SKTVIKGCVD QQHPEDPQSS SKSKQKKRRI AELDPKWSKD ELTHFYEAYR 60 RHGKDWKKVM NPQAEEVVKQ VEYLAKHGNV EMPQNRMQME VRIYPTPLLT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816481.1	4e-29	protein ALWAYS EARLY 3-like
TrEMBL	A0A3L6SNM2	9e-29	A0A3L6SNM2_PANMI; Protein ALWAYS EARLY 2-like
STRING	Pavir.J02622.1.p	4e-28	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8696	30	38