PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06228.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 278aa    MW: 31339.6 Da    PI: 9.6728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06228.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006293116123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   +kC+ C+k  s+ s +  H    H
  Zmw_sc06228.1.g00010.1.am.mk  93 FKCHVCHKKLSTASGMAIHVLQvH 116
                                   89***************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080810.4264123IPR003656Zinc finger, BED-type
SuperFamilySSF576678.48E-569118No hitNo description
SMARTSM003552.86992IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807192IPR007087Zinc finger, C2H2
SMARTSM003550.193116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVEHSRAYQS PRWPDPSERW AAVSSISSGL ALEFFLLPAP RSSSSRRGRG VQGKGRRAMG  60
KKKKRVDKVF CYYCDREFDD EKILVQHQKA KHFKCHVCHK KLSTASGMAI HVLQVHKESV  120
TNWFHPDLEH FRSWPIASSA ATNPMRVYDC PKRIETSPPG SLERGAEGAS GAEQGEWNCG  180
RAAQGVGRRV PNAKPGREST EIEIYGMQGI PADVLAAHYG EEEDPSSKVA KVEVPQRGLL  240
DQLKLGIHNN QHIHSNLLFQ FLKWLLLCSH NSPYFPYR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0INM42e-59A0A0E0INM4_ORYNI; Uncharacterized protein
STRINGONIVA09G20740.14e-60(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7606322