PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06243.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 526aa    MW: 57118.1 Da    PI: 6.4767
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06243.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-083113481954
                                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Zmw_sc06243.1.g00020.1.am.mk 311 FEHflHPYPKDSEKLMLARQTGLSSGQVSNWFINARVR 348
                                   554459******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075264.7E-13147226IPR006563POX domain
PROSITE profilePS5007111.904289352IPR001356Homeobox domain
CDDcd000861.56E-11292353No hitNo description
SMARTSM003892.2E-8292356IPR001356Homeobox domain
SuperFamilySSF466899.84E-17293359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27295358IPR009057Homeodomain-like
PfamPF059201.0E-16309348IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MCRRTAAFFS TYTNHTDLTV GGNMSYHHYN AYSDSATGGL IPIPATIAQR VRGHAAHGED  60
GRDEPAPFVS TREGQASGAE IGLQTQLLMA NATSAAQSQG LFHSLGSQGV PASLYQQYSP  120
AGMAAASLLS PNLAAAASRN AQSNIYIENS KYLKAARELL DEVVSVRHAI KRKGDKNQSK  180
DSGECTDAEK AGGEHEGNST TELTASERQD LQNKVWALVA LLDQVMSVLA TVTMLFTEFE  240
GYVVQSLRRS LGEKDTAAQT GGLSRLRYID QHLRQQRAMQ QFGMMQQPQH AWRPQRGLPE  300
SAVSVLRAWL FEHFLHPYPK DSEKLMLARQ TGLSSGQVSN WFINARVRLW KPMIEEMYKE  360
EFGAEMDSHS HSENAGNKGK DEAMSSEDHD EFQSPSSAAK HGAGHHTDTF KSEATGTYAN  420
SLNLNHQSAV GSGNGSRLLQ DALAHHRHGG DARFVSYGYM AGHVGGYDGG GSVSLTLGLQ  480
HCDDAGAAPA EQPGLLYGNV GDFEFVNGDE DRQRFGSSKL PHDFVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17298355158Homeobox protein Meis1
4xrs_B2e-17298355158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797172.10.0BEL1-like homeodomain protein 7
TrEMBLA0A1E5W1C90.0A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRINGSi034960m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131