PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06377.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 395aa MW: 42990.9 Da PI: 5.6827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06377.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.4e-05	179	220	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L+el+P + sk Ka +L + ++Y++sLq Zmw_sc06377.1.g00030.1.sm.mk 179 QVRRERISERMRFLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 220 67****************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.99E-8	157	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.5E-12	160	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.131	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0012	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-12	178	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MAQCGGDLLS RRLHQETTVE GLCQGLLDLD EDMFGAMCSA VGYLQEWPDV SGTNLGVAAP 60 DAGNANDDDS CSGGGVRKRK TDSCLDAKVR DLSFFCESDH SDGCKRPRAK QQLISPSDPA 120 CEIAGKGKEE RAKAGTKKKA EVAAGQKTDY IHVRARRGQA TDSHSLAERN SKPNEFNAQV 180 RRERISERMR FLQELVPGCS KVTGKAGMLD EIINYVQSLQ KQVEVLSFHL CFFQLAFSSV 240 LTGRLLPLLL QFLSMKIAAS NPVVSFDIVE DLFGRQLKQA CDTAAPPALA LPDGQLQQSC 300 VQMSPMQQVH LPAGSFGFGL EMVVNSPYPP AAADGSNVSC LDVNGAAATA LSTAMPVNVN 360 FSIHKDMMLG MELAMQMWYQ ASDFRYMTDL RQFDT

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MAQCGGDLLS RRLHQETTVE GLCQGLLDLD EDMFGAMCSA VGYLQEWPDV SGTNLGVAAP  60
DAGNANDDDS CSGGGVRKRK TDSCLDAKVR DLSFFCESDH SDGCKRPRAK QQLISPSDPA  120
CEIAGKGKEE RAKAGTKKKA EVAAGQKTDY IHVRARRGQA TDSHSLAERN SKPNEFNAQV  180
RRERISERMR FLQELVPGCS KVTGKAGMLD EIINYVQSLQ KQVEVLSFHL CFFQLAFSSV  240
LTGRLLPLLL QFLSMKIAAS NPVVSFDIVE DLFGRQLKQA CDTAAPPALA LPDGQLQQSC  300
VQMSPMQQVH LPAGSFGFGL EMVVNSPYPP AAADGSNVSC LDVNGAAATA LSTAMPVNVN  360
FSIHKDMMLG MELAMQMWYQ ASDFRYMTDL RQFDT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813679.1	1e-112	transcription factor bHLH49-like
TrEMBL	A0A0A9CZD0	1e-129	A0A0A9CZD0_ARUDO; Uncharacterized protein
STRING	Si017630m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8252	37	49