PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06439.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 253aa    MW: 27163.3 Da    PI: 7.8787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06439.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-18454155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  Zmw_sc06439.1.g00050.1.am.mk  4 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 54
                                  79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-16462No hitNo description
SuperFamilySSF541717.19E-19463IPR016177DNA-binding domain
PfamPF008472.6E-12454IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-27562IPR001471AP2/ERF domain
SMARTSM003801.8E-33568IPR001471AP2/ERF domain
PROSITE profilePS5103219.915562IPR001471AP2/ERF domain
PRINTSPR003674.3E-7617IPR001471AP2/ERF domain
PRINTSPR003674.3E-72844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
NNHSKFVGVR QRPSGRWVAE IKDTTQKIRM WLGTFETAEA AAKAYDEAAR LLRGADTRTN  60
FAPRISPNCP LAVRIRGLLH HKKVKKQAKP SAAASSSSAA GSSKKNASSS PAPATSNSNS  120
SDSRDSACGG SSSSLSSCDD AMKRVGEVYR PDIAPLAAEE FDSWMFDSAF GQFSPLDGFP  180
ATIDSAVPAA PTLTEEPRPA AAPGEMAEFE RIKVERRISA SLYAINGLQE YFDRVFDASA  240
CDSSLWDLSP LCH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-123611271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958111.13e-97ethylene-responsive transcription factor RAP2-11
TrEMBLK3ZVQ51e-101K3ZVQ5_SETIT; Uncharacterized protein
STRINGSi030686m1e-102(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273