PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06448.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 127aa MW: 13497.2 Da PI: 8.9155

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06448.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.7e-05	61	99	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YI+ Lq Zmw_sc06448.1.g00040.1.sm.mk 61 RKEKLGDRIAALQQLVCPF-----GKTDTASVLMEAIGYINFLQ 99 7788999*********9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.988	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	59	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.98E-6	59	103	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-8	63	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MAVVNAMGGG RHWGAETNAA AACHQKTTVP SSSSSSPAPS PKKPRLESQS SNAVVPSFKV 60 RKEKLGDRIA ALQQLVCPFG KTDTASVLME AIGYINFLQD QVKGSPNGNG EEQEETRLDL 120 RSRGLCL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816405.1	8e-46	transcription factor bHLH110
Swissprot	Q9SFZ3	3e-29	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A3L6STE6	4e-50	A0A3L6STE6_PANMI; Uncharacterized protein
STRING	Pavir.Ea00834.1.p	6e-50	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]