PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06451.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 361aa    MW: 39630.9 Da    PI: 10.1765
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06451.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-10236279955
                             AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zmw_sc06451.1.g00010.1.am.mkhc 236 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 279
                                     667899****988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.77E-22218289No hitNo description
SMARTSM003801.9E-27219293IPR001471AP2/ERF domain
PROSITE profilePS5103217.873219287IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15235289IPR016177DNA-binding domain
PfamPF008471.2E-5236279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-15237287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAIAAVEGAR PVMERDLALP RRQLRLSWLC RCSPVALFHW RSAEAEGPKL EDFMSVTCSN  60
KSGSIHAVQS KYNEVHDLQP LSSSYYYHNH GSGGGIDLEI NVNAPPSSGH PEHRVLSPQN  120
HHYHHHFLPH HGQYFLSTPA NPSPSGAMPV MPMYNAAAGV GSSMSISGIK SWLREAMYVP  180
ERSSALSLSV ADMPSEPLPA PMPVAARRPS ETFGQRTSQY RGVTRFCGRA RACFTHHQHG  240
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDISK YDVKRICART  300
HLIGGDAACR RSPRACLTGR RSSPRSPAPI ALTPRARPTT RTPRRATAAR TCCTASSTRP  360
P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.12e-71AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6TIN76e-70A0A3L6TIN7_PANMI; Uncharacterized protein
STRINGEMT184621e-67(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3168344