PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06467.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 108aa    MW: 12098.9 Da    PI: 8.1366
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06467.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.51.2e-143358126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                  +ktelC+ + +tG C+yG+ C+FaHg
  Zmw_sc06467.1.g00050.1.am.mk 33 FKTELCNKWEETGACPYGGHCQFAHG 58
                                  79***********************9 PP
2zf-CCCH17.57.2e-067195125
                                  --S---SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                                  ykt  Cr  +++  C+yG rC+F H
  Zmw_sc06467.1.g00050.1.am.mk 71 YKTQVCRMVLAGEPCPYGHRCHFRH 95
                                  99*********66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-182765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-112964IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3143260IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-83259IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-123358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-116696IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-86796IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3387098IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-47097IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MYVDAAGGMK GEEAKEKQGA GGVELEVYNQ GMFKTELCNK WEETGACPYG GHCQFAHGVA  60
ELRPVIRHPR YKTQVCRMVL AGEPCPYGHR CHFRHTLTPA ERLLLPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-203396467Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969302.15e-62zinc finger CCCH domain-containing protein 9 isoform X1
RefseqXP_004969303.15e-62zinc finger CCCH domain-containing protein 9 isoform X2
SwissprotA2ZVY51e-56C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLK3XJH71e-60K3XJH7_SETIT; Uncharacterized protein
TrEMBLK3XJJ01e-60K3XJJ0_SETIT; Uncharacterized protein
STRINGSi002050m2e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784