PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06580.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 351aa    MW: 37434.3 Da    PI: 6.297
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06580.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.71e-27123183259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs++d  v+++tY+geH+++
  Zmw_sc06580.1.g00030.1.sm.mk 123 DDGFSWRKYGQKDILGAKFPRGYYRCTYRgtqGCLATKQVQRSDSDLCVFDVTYQGEHTCH 183
                                   8***************************99889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-27115184IPR003657WRKY domain
PROSITE profilePS5081122.768117180IPR003657WRKY domain
SuperFamilySSF1182902.22E-24121183IPR003657WRKY domain
SMARTSM007743.0E-39122184IPR003657WRKY domain
PfamPF031061.5E-25123183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQDGAGGGGG EGGMHLLLSI LADGEDQARL LAELPADDPR LGEEHYRAAA RRLQCTLGKA  60
XXXXAASSRG TDSPRSADEG SGGSGTVPVE ALERPAVCKR RKGLPRWTAK FRVPDANLEA  120
TPDDGFSWRK YGQKDILGAK FPRGYYRCTY RGTQGCLATK QVQRSDSDLC VFDVTYQGEH  180
TCHQKLRHAS ASVAGASHHH DMSQPPPPPD PSTELLPGFT ERLKVETTTD QAPLHASSSR  240
DQDHAVSTSP FAFHAGGVAP DEAFASVPAG ASYYAVPHCL EPGSGYDDYG YDLPRMRGAG  300
SELGEVVSRA TAPVAADPSN AGFEYSLYHH GEFDPHLPFA PSGGGCGSRH W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-211241811875Disease resistance protein RRS1
5w3x_D7e-211241811875Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811264.11e-117probable WRKY transcription factor 53
TrEMBLA0A2S3HLN71e-116A0A2S3HLN7_9POAL; Uncharacterized protein
STRINGSi008812m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730