PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06620.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 174aa MW: 18404.8 Da PI: 5.9019

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06620.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.7	7.4e-28	1	94	14	100
DUF260 14 kdCvlapyf....paeqp......kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 ++Cv+ap+f + ++fa+vhk+FGasnv k+l+++p r+da+s+++yeA+ar+ dPvyG+vg+il+lq Zmw_sc06620.1.g00050.1.am.mk 1 PGCVFAPHFggtrE---HgggagaAQFAAVHKVFGASNVAKMLSRVPAALRRDAASTVCYEAQARVADPVYGCVGTILALQ 78 57*****66541...13444559**************************************************** PP DUF260 85 qqleqlkaelallkee 100 +q++ ++ el+++++e Zmw_sc06620.1.g00050.1.am.mk 79 HQVALVQGELSSVQTE 94 *********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.267	1	95	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-30	1	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
PGCVFAPHFG GTREHGGGAG AAQFAAVHKV FGASNVAKML SRVPAALRRD AASTVCYEAQ 60 ARVADPVYGC VGTILALQHQ VALVQGELSS VQTELLNRRL ALATVHPSLP SASPTSQMLN 120 CGAVPQTVDF IDIDHSLRGL PPPLVPMQQP QQEEEKDEGS PIVDVSWENR NSCD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-27	1	97	24	113	LOB family transfactor Ramosa2.1
5ly0_B	7e-27	1	97	24	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970122.1	2e-83	LOB domain-containing protein 4
TrEMBL	K3XQV3	5e-82	K3XQV3_SETIT; Uncharacterized protein
STRING	Si004290m	8e-83	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14085	25	26