PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06654.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 185aa    MW: 20603.9 Da    PI: 10.6169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06654.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.4e-15105150248
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Zmw_sc06654.1.g00010.1.am.mk 105 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 150
                                   78*****************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.23599154IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-19101154IPR009057Homeodomain-like
SMARTSM007171.5E-14103152IPR001005SANT/Myb domain
SuperFamilySSF466891.43E-17103183IPR009057Homeodomain-like
PfamPF139215.6E-14107167No hitNo description
CDDcd001677.15E-13107150No hitNo description
CDDcd116592.45E-20152185No hitNo description
PROSITE profilePS5129411.145155185IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-9155182IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAKYTKCPRL GHAGSQRRGR TVPIRHPSLP SHPTPKPPPP PPPVAVHTAQ LTPPPPILSL  60
AVLSLPTQAA NPGSAEPGHP EANRRALFGG ETEVEECGCR ARRGGVWKNT EDEILKAAVM  120
KYGKNQWARI SSLLVRKSAK QCKARWYEWL DPSIKKTEWT REEDEKLLHL AKLMPTQWRT  180
IAPIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L8e-48103185789Cell division cycle 5-like protein
5xjc_L8e-48103185789Cell division cycle 5-like protein
5yzg_L8e-48103185789Cell division cycle 5-like protein
5z56_L8e-48103185789Cell division cycle 5-like protein
5z57_L8e-48103185789Cell division cycle 5-like protein
5z58_L8e-48103185789Cell division cycle 5-like protein
6ff4_L8e-48103185789Cell division cycle 5-like protein
6ff7_L8e-48103185789Cell division cycle 5-like protein
6icz_L8e-48103185789Cell division cycle 5-like protein
6id0_L8e-48103185789Cell division cycle 5-like protein
6id1_L8e-48103185789Cell division cycle 5-like protein
6qdv_O8e-48103185789Cell division cycle 5-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2552435