PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06690.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 178aa    MW: 20234.7 Da    PI: 5.8963
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06690.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.5e-2177130356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  Zmw_sc06690.1.g00030.1.am.mk  77 KKRRLTPEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 130
                                   5678*************************************************9 PP
2HD-ZIP_I/II133.29.7e-4376167192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE++y++Lk+aydal+++++ L 
  Zmw_sc06690.1.g00030.1.am.mk  76 EKKRRLTPEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETEYDRLKAAYDALAADHQGLL 156
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++ +Lr++++
  Zmw_sc06690.1.g00030.1.am.mk 157 ADNGNLRAQVA 167
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.47E-1971135IPR009057Homeodomain-like
PROSITE profilePS5007118.28572132IPR001356Homeobox domain
SMARTSM003891.1E-1975136IPR001356Homeobox domain
PfamPF000463.5E-1877130IPR001356Homeobox domain
CDDcd000861.93E-1777133No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2278139IPR009057Homeodomain-like
PRINTSPR000312.3E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000312.3E-6112128IPR000047Helix-turn-helix motif
PfamPF021833.2E-12132167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDPGRMGFDS GGVRRGEGPQ MLLFGGGGSA NSNGFIRGVP MAVLGRDDDA RVGKRPFFTT  60
HEELMEEEYY DEQAPEKKRR LTPEQVQMLE RSFEEENKLE PERKTELARR LGMAPRQVAV  120
WFQNRRARWK TKQLETEYDR LKAAYDALAA DHQGLLADNG NLRAQVATSI YASSMCFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973433.13e-90homeobox-leucine zipper protein HOX5
SwissprotQ6ZA745e-74HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
SwissprotQ9XH365e-74HOX5_ORYSI; Homeobox-leucine zipper protein HOX5
TrEMBLB4FLB13e-94B4FLB1_MAIZE; HB transcription factor
STRINGSi014228m1e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]