PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06712.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 1294aa    MW: 141519 Da    PI: 6.1984
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06712.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-12144188147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Zmw_sc06712.1.g00010.1.am.mkhc 144 RESWTEPEHDRFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 188
                                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.02E-15138194IPR009057Homeodomain-like
PROSITE profilePS5129414.75139193IPR017930Myb domain
TIGRFAMsTIGR015573.2E-18142191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-5142194IPR009057Homeodomain-like
SMARTSM007176.7E-10143191IPR001005SANT/Myb domain
PfamPF002497.7E-10144188IPR001005SANT/Myb domain
CDDcd001671.57E-6146189No hitNo description
PfamPF101919.5E-29454547IPR019335Conserved oligomeric Golgi complex subunit 7
PfamPF101911.4E-2765671290IPR019335Conserved oligomeric Golgi complex subunit 7
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0007030Biological ProcessGolgi organization
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009933Biological Processmeristem structural organization
GO:0010016Biological Processshoot system morphogenesis
GO:0016049Biological Processcell growth
GO:0045053Biological Processprotein retention in Golgi apparatus
GO:0005829Cellular Componentcytosol
GO:0017119Cellular ComponentGolgi transport complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1294 aa     Download sequence    Send to blast
RNPAHRTWTP HVSVPCRLCG QERTDRKRRE TSTSPGARPI PSASTVKSSS SPSLLRTCSN  60
SKQGPHRLMV SMSTTPTPLD AAKSASVAGG GVDEGGGGGG KQPLMRGAAV AMVAPPPMAV  120
PAPDPAAGEE VRKVRKPYTI TKSRESWTEP EHDRFLEALQ LFDRDWKKIE AYVGSKTVIQ  180
IRSHAQKYFL KVQKNGTGEH LPPPRPKRKA AHPYPQKASK NVSQAVLPQQ VPPLGDQGSV  240
MSVDTSNVVR NTNPSGAGPS WDNALVQPSN ASQGAVVTNN CSSSIESPSG TWPASEAVEQ  300
ENMVPPLRAM PDFARVYSFL GSIFDPDTSG HLQRLKAMDP IDVETVLLLM KNLSTNLTSP  360
DFEEHRRLLS SYSYGSGDPI KFEGSENLGS PQNCHLPFIT PYETVHKIVI VLSRGKLAPA  420
NKTVQVFAEL RGRKSALKSE PARLGVLAEM VVVDASEFGA EGFDPKRWIN AALDGRHPSE  480
PLDRFLADAE ERLRAAADDA AAALERDSGD ALRRIPLACR DALRLREDAV ALRSHLASVL  540
QSLSQVPSSV LIGSGSRTTL DWFARIAEGS SAESITALAR IDTVKQRMEA AYATLQDAAG  600
LAQLSQSVED VFSSGNLPKA AETLATMRHC LSAVGEVAEF ANVRKQLEVL EERLDEMVQP  660
RLVEALSSRK IDAVQDLRGI LIRIGRYKSL EVQYTKIHVR PLKRLWEDFD LRQRVSRMEI  720
ETHGGDSINS LSFSSWLPNF YDEALLYLEQ EWKWCLTAFP EEYKSLVPKV LIETMNELNS  780
SFVSRVNVAT GDVVPETRSV AKGIMDILSG DLPKSTKLQN KHLQALIELH NMTGTFARNI  840
QHLFSESDLA VMLNTLKAIY SPYEIFKARY GQMERAILSA EMAGIDIRGA VSRGVGAQGI  900
ELSETVRRME ESIPQIIVLL EAAVERCISF TGGSEADELV VALDDIMLLY ISNLQETLKS  960
LRIVCGLDTT AHGDALKKDA GLEKKDAQRL VDVSEEEEWA IVQGALQILT VADCLTSRTS  1020
VFEASLRATL ARIGTNFSLS GFGSNLDKSP STTADENAEM PVGGRAALDI AAIRLSDLPD  1080
KSKKLFTVLE QSKDPRFHAL PLTSQRVAAF SDTVNELVYD VLISKVRHRL SEVARLPIWS  1140
SVEEQGGLPL PSFSAYPQAY VTSVGEYLLT LPQQLEPLAE GISGNEAGND EAQFFATEWI  1200
FKVAEGATAL FMEQLRGIQY ITDRGAQQLA ADIEYLNNVL SALSMPIPPF LSTFHACVST  1260
PRDQVRDTIK SDGGSQLDLP TAHLVCKIRR ISLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429DRKRRE
212861292KIRRISL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438832.10.0conserved oligomeric Golgi complex subunit 7
TrEMBLA0A1E5VNM40.0A0A1E5VNM4_9POAL; Conserved oligomeric Golgi complex subunit 7
STRINGORGLA06G0203900.10.0(Oryza glaberrima)
STRINGSb10g026850.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1108922