PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06779.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 667aa MW: 75042 Da PI: 8.2092

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06779.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	65	119	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps++ r eL++k+gLt+rq ++WF+ rR k++k Zmw_sc06779.1.g00020.1.sm.mkhc 65 KRMMKTPYQLEVLESTYAVQQYPSEALRMELSAKIGLTDRQLQMWFCHRRLKDRK 119 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.31E-17	44	119	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-18	46	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.775	60	120	IPR001356	Homeobox domain
SMART	SM00389	1.3E-16	62	124	IPR001356	Homeobox domain
CDD	cd00086	3.54E-14	65	120	No hit	No description
Pfam	PF00046	6.3E-16	65	119	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MDAGADAGGG VVIDGDGAAK AVEEAPAEMT PPPLAPAPAP APTAGPSSAS GPGAGTSGSG 60 EKPVKRMMKT PYQLEVLEST YAVQQYPSEA LRMELSAKIG LTDRQLQMWF CHRRLKDRKP 120 PAKRQRCRDE EIALPPVMAP PPVLPLPAIP LASSDLMVGT ALPYDEPLHP TYRRGAGRSS 180 AVPRISLPDI GRRYYEPPPV LLPPPAAMQL TPSELRLIHS VESQLGEPLR DDGPVLGIEF 240 DPLPPGAFGA PIVPEQQKPQ VRSYDTKIFS RHDSKLLKAS AFLPTMETPF VPNSFGGKRK 300 STVSNPPIVQ PHLGSQAVHE YQFLPEQPSA TYERASQSHY YDTPVELSNS RISPITSGSR 360 LPHGSEEAAP SYAFQGQTSD SGLLPQSDRS QMFSTVQGDY EMNQSTSNLN SVPVEGQFGT 420 SHISGFENSL ISSERGVYHD DETSRVDRKR KHNEEAKIAK EVEAHERRIR KEIEKQDMLN 480 RKREEQKRKE MERLDRERRK EEERLLRERQ REEERFQREQ RREHERMEKF LLKQSRRAEK 540 QRQKEEIRKQ KEAARQKAAS ERATARRIAR EYMELMEDER LELMELAAQS KALPSMLHLD 600 NNTLQQLDTL QGMLSQFPPQ TVRLKVPFSI KPWTGSEDNV AKLLMVMMSF YFLDSFMAFL 660 NGSLLRS

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MDAGADAGGG VVIDGDGAAK AVEEAPAEMT PPPLAPAPAP APTAGPSSAS GPGAGTSGSG  60
EKPVKRMMKT PYQLEVLEST YAVQQYPSEA LRMELSAKIG LTDRQLQMWF CHRRLKDRKP  120
PAKRQRCRDE EIALPPVMAP PPVLPLPAIP LASSDLMVGT ALPYDEPLHP TYRRGAGRSS  180
AVPRISLPDI GRRYYEPPPV LLPPPAAMQL TPSELRLIHS VESQLGEPLR DDGPVLGIEF  240
DPLPPGAFGA PIVPEQQKPQ VRSYDTKIFS RHDSKLLKAS AFLPTMETPF VPNSFGGKRK  300
STVSNPPIVQ PHLGSQAVHE YQFLPEQPSA TYERASQSHY YDTPVELSNS RISPITSGSR  360
LPHGSEEAAP SYAFQGQTSD SGLLPQSDRS QMFSTVQGDY EMNQSTSNLN SVPVEGQFGT  420
SHISGFENSL ISSERGVYHD DETSRVDRKR KHNEEAKIAK EVEAHERRIR KEIEKQDMLN  480
RKREEQKRKE MERLDRERRK EEERLLRERQ REEERFQREQ RREHERMEKF LLKQSRRAEK  540
QRQKEEIRKQ KEAARQKAAS ERATARRIAR EYMELMEDER LELMELAAQS KALPSMLHLD  600
NNTLQQLDTL QGMLSQFPPQ TVRLKVPFSI KPWTGSEDNV AKLLMVMMSF YFLDSFMAFL  660
NGSLLRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969494.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A368R972	0.0	A0A368R972_SETIT; Uncharacterized protein
STRING	Sb03g030770.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52