PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06789.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 257aa MW: 27713.4 Da PI: 10.7213

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06789.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.1	8.3e-37	17	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ v d+ +++PwdLp a++ e yfFs r+ ++ g r++ra Zmw_sc06789.1.g00050.1.sm.mkhc 17 LPPGFRFHPTDEELVVQYLRRKALSRPLPA-AVIPVVhDVARLDPWDLP---GARDGEGYFFSLRRVPATGGVRRRRA- 90 79**************************.8899998*******...3467899**9988888888885. PP NAM 79 ksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkge....ktdWvmheyrl 128 sgyWkatgk k+v+ k+ lvg+k+ L+f++g+ ++++ +t Wvmheyrl Zmw_sc06789.1.g00050.1.sm.mkhc 91 GSGYWKATGKAKPVFLLgsgcggKRYLVGVKTALTFHRGEPSRASvsssRTAWVMHEYRL 150 89*********987777655566******876554433334*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-43	15	183	IPR003441	NAC domain
PROSITE profile	PS51005	44.677	17	183	IPR003441	NAC domain
Pfam	PF02365	9.2E-24	18	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEWPVAAARD GQAPRKLPPG FRFHPTDEEL VVQYLRRKAL SRPLPAAVIP VVHDVARLDP 60 WDLPGARDGE GYFFSLRRVP ATGGVRRRRA GSGYWKATGK AKPVFLLGSG CGGKRYLVGV 120 KTALTFHRGE PSRASVSSSR TAWVMHEYRL AVPGVGVEQR KHATHGLAAH PGEEWIVCRV 180 FSKTSPIRRP DQDAAGETPG NLASAAPPRD QGAGRLSLLL SPPQPQASSS SCVTGVTEVS 240 DQDEVNSGRG KSSQREA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-33	9	185	7	170	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957303.1	1e-100	NAC domain-containing protein 41
TrEMBL	A0A0A9GST6	1e-100	A0A0A9GST6_ARUDO; Uncharacterized protein
TrEMBL	A0A0A9PEC7	1e-99	A0A0A9PEC7_ARUDO; Uncharacterized protein
STRING	Si030942m	4e-99	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12805	27	35