PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06879.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 228aa MW: 24298.4 Da PI: 8.1231

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06879.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	22	76	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+ri+s +++Lr +l ++ ++ + +Ka+ L kAve +++L Zmw_sc06879.1.g00010.1.am.mk 22 RNHREAEKRRRERIKSHLDRLRNVLACDPkaiQTLLDRIDKASLLAKAVERVRDL 76 78*********************996669899999***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.586	19	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-8	22	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-10	22	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-10	23	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-7	25	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
EDEAAAAAAA AAAHDRALAA SRNHREAEKR RRERIKSHLD RLRNVLACDP KAIQTLLDRI 60 DKASLLAKAV ERVRDLKQRV AGVGEAAPAH LFPTEHDEIV VLASGAVFEA SVCCDDRSDL 120 LPELIETLHA LRLRTLRAEM ATLGGRVRNV LVLARDTTGR DIHGDGGVVT GDDGGYGRSD 180 LAAAGSINGN GGEFLKEALR ALVERPGAGA GDRPKRRRVS DGNMQAAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	218	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981312.1	1e-89	transcription factor bHLH106-like
TrEMBL	A0A368SD61	2e-88	A0A368SD61_SETIT; Uncharacterized protein
STRING	Sb01g003830.1	4e-86	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9578	30	39