PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06896.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 332aa MW: 35647.5 Da PI: 9.546

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06896.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.3	6.1e-16	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r tf kRr+ ++KK +EL +LCd++++v++++ Zmw_sc06896.1.g00020.1.am.mk 11 IANDSARRATFNKRRASLMKKTSELATLCDVDACVLVYGA 50 89************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-20	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.325	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-22	1	86	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.37E-28	2	86	No hit	No description
PRINTS	PR00404	2.3E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-16	11	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MARKKVKLQL IANDSARRAT FNKRRASLMK KTSELATLCD VDACVLVYGA GSSQPEVWPP 60 SATEAARILS RFKAMPEVDQ CKRMMDMEDF LRQRNAKLKE QLEKASKENH KRETALLLHN 120 AITGRGPSVA ALSRDELISL ESTVNTRLKE VMNAIQRLKE QCHGDPATAL QLSMASQSQV 180 PPAVPYTAGS DFSEAVPAPD LESWLLDLTK DEGFGGDSGS FGGGVAGAST SGGLGDMLQL 240 GNTMARLPEA DQKPSFAFPP PMSHFCSEKP TKHGSRPRPQ DREGAKPRTE RTSPATSPLT 300 PSRPPPPPPT VPRPAPDPAA TASSTGSGSL PR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008647071.1	1e-76	agamous-like MADS-box protein AGL80
TrEMBL	A0A1E5ULN7	7e-77	A0A1E5ULN7_9POAL; Agamous-like MADS-box protein AGL80
STRING	GRMZM5G839969_P01	5e-76	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202