PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06951.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 630aa MW: 66599.8 Da PI: 8.0242

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06951.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85	6.6e-27	562	611	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ++d++kyF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl Zmw_sc06951.1.g00010.1.am.mk 562 DQIGFDDIRKYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 611 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.098	545	630	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-21	564	611	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MGALLAHTEC ARSAFVPYFS QVDADNVAGF CASAEIGAHH AGIRMSLVDK CTGSIETAGE 60 AGAVSGRGSV AASGGGARVP YEPCVRCSAG RGVTRGCGVA MSREMEIVAL VCEAEECCPS 120 PLSPSCLCHA RIHVGSRRLA HGRGGHQGRV GGGSGLGAAM AGNGTGVRDN VPNFKREGDC 180 GSAVDRSLAR ARRGALRRRV HGVRTYSTGK LIDDPEAFLR RVRRREIEPE PMAREAANAP 240 AAGRPHHPAT PATMGRHART RGKFLRPPSN SDSAAHTLLP VLLYPQIFGP CAASVSLSIS 300 AMAMVPYALD GGDADWYPDL DDGFPLLRSS SSPFDISEED NLLSAVAPPG PPRGLIRDSN 360 LEGSDHSPLL LPADFSASSA CLDVISIGWF SRDEDSYRLP MFPAAVPPAA GDQFYFDGLP 420 PLPATIATAG VLDDVLMLQP FSDIDLDAFG GSADVNNAAP PDNNMMIVPS DRPCAAGQVA 480 GVDGLGNKHV ATAADCYHPV AASSFGFNMA VMRHGEHQNQ ASSVVALPPP PPMPRPHHQV 540 RMRSMRSGTD RSAPPAGKTR LDQIGFDDIR KYFYMPITKA AREMNVGLTV LKKRCRELGV 600 ARWPHRKMKS LKSLILNVQE MGKGMSPAAV

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MGALLAHTEC ARSAFVPYFS QVDADNVAGF CASAEIGAHH AGIRMSLVDK CTGSIETAGE  60
AGAVSGRGSV AASGGGARVP YEPCVRCSAG RGVTRGCGVA MSREMEIVAL VCEAEECCPS  120
PLSPSCLCHA RIHVGSRRLA HGRGGHQGRV GGGSGLGAAM AGNGTGVRDN VPNFKREGDC  180
GSAVDRSLAR ARRGALRRRV HGVRTYSTGK LIDDPEAFLR RVRRREIEPE PMAREAANAP  240
AAGRPHHPAT PATMGRHART RGKFLRPPSN SDSAAHTLLP VLLYPQIFGP CAASVSLSIS  300
AMAMVPYALD GGDADWYPDL DDGFPLLRSS SSPFDISEED NLLSAVAPPG PPRGLIRDSN  360
LEGSDHSPLL LPADFSASSA CLDVISIGWF SRDEDSYRLP MFPAAVPPAA GDQFYFDGLP  420
PLPATIATAG VLDDVLMLQP FSDIDLDAFG GSADVNNAAP PDNNMMIVPS DRPCAAGQVA  480
GVDGLGNKHV ATAADCYHPV AASSFGFNMA VMRHGEHQNQ ASSVVALPPP PPMPRPHHQV  540
RMRSMRSGTD RSAPPAGKTR LDQIGFDDIR KYFYMPITKA AREMNVGLTV LKKRCRELGV  600
ARWPHRKMKS LKSLILNVQE MGKGMSPAAV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30