PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06953.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 470aa MW: 51766.1 Da PI: 10.5775

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06953.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.8e-39	375	469	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+ slvyeA+ r+rdPvyG++g i+ Zmw_sc06953.1.g00020.1.am.mk 375 PCAACKLLRRRCAQECPFAPYFSPHEPQKFAAVHKVFGASNVSKMLLEVPEAERGDAVGSLVYEANLRLRDPVYGCMGAIS 455 7****************************************************************************** PP DUF260 82 klqqqleqlkaela 95 +lqqql+ l+ael+ Zmw_sc06953.1.g00020.1.am.mk 456 DLQQQLNALEAELE 469 *********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05097	1.5E-5	108	146	IPR007789	Protein of unknown function DUF688
PROSITE profile	PS50891	24.661	374	470	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-40	375	469	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MPLDNRLDHA YPRLLPRCNP VLPPSSRKRY YYSTGTHERL DRSSVPEMPP GVAVGDQQAA 60 APPPSPRRGI LLPQSPLRIK QDGKFYERLL TRESASAGNL SFRYYWAEPG SVPFVWETQP 120 GTPKDVAGMA AGALPAITPP PSYLLRHGTG SKLTAASHHE QSKKGKRKGC RLRRIRMGFV 180 TGIFRRLSLM KAWRRFVPPP INVSSSSSRW LFSSVATTER GKHDDHHENE RKTAMCGSFR 240 FRARPSPWLP RFRSAGSVDG GQSWTLKVIR RDSSVVVDDS HRTTKLDGQV MISREVQTAA 300 GAINCWATGR RATEDDAARG DGRRATAAER LDKIRKKIKG EPEASGITPS ASTVAAETPV 360 PRRLGLGGAL NTVTPCAACK LLRRRCAQEC PFAPYFSPHE PQKFAAVHKV FGASNVSKML 420 LEVPEAERGD AVGSLVYEAN LRLRDPVYGC MGAISDLQQQ LNALEAELEA

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MPLDNRLDHA YPRLLPRCNP VLPPSSRKRY YYSTGTHERL DRSSVPEMPP GVAVGDQQAA  60
APPPSPRRGI LLPQSPLRIK QDGKFYERLL TRESASAGNL SFRYYWAEPG SVPFVWETQP  120
GTPKDVAGMA AGALPAITPP PSYLLRHGTG SKLTAASHHE QSKKGKRKGC RLRRIRMGFV  180
TGIFRRLSLM KAWRRFVPPP INVSSSSSRW LFSSVATTER GKHDDHHENE RKTAMCGSFR  240
FRARPSPWLP RFRSAGSVDG GQSWTLKVIR RDSSVVVDDS HRTTKLDGQV MISREVQTAA  300
GAINCWATGR RATEDDAARG DGRRATAAER LDKIRKKIKG EPEASGITPS ASTVAAETPV  360
PRRLGLGGAL NTVTPCAACK LLRRRCAQEC PFAPYFSPHE PQKFAAVHKV FGASNVSKML  420
LEVPEAERGD AVGSLVYEAN LRLRDPVYGC MGAISDLQQQ LNALEAELEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	375	470	11	106	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	375	470	11	106	LOB family transfactor Ramosa2.1