PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06981.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 291aa MW: 31688.1 Da PI: 10.0264

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06981.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.1	3.4e-27	5	74	63	128
NAM 63 krdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 rd+ky+tg r+nrat++gyWk+tgkdke+++ + elvg+kktLvfykgrap+gekt+Wvmheyr+ Zmw_sc06981.1.g00020.1.sm.mkhc 5 LRDRKYPTGVRTNRATNAGYWKTTGKDKEIYTGqppaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRV 74 689**************************9766666677*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.945	1	95	IPR003441	NAC domain
SuperFamily	SSF101941	1.23E-32	4	95	IPR003441	NAC domain
Pfam	PF02365	1.8E-12	13	74	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MPLSLRDRKY PTGVRTNRAT NAGYWKTTGK DKEIYTGQPP ATPELVGMKK TLVFYKGRAP 60 RGEKTNWVMH EYRVHSKSTS KSTKDEWVVC RVFAKSAGVK KYPSNNSHSR SHHHLHHPYT 120 LDMVPPLMPT LLQHDPFARH HHHPYMTPAD MAELARLARG TPGLHPHIQP HPGGFINPTA 180 PQFAIHGLNL NLGASPAMPP PPPPQPALHA AMTTSMTAMG HHTAPSAAGP GGHVMGSEQQ 240 QQMAPGLGGC VMTLGAGPDG GFAGTDGVRY QNLDVEQLVE RYWPGAAGYQ V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-26	3	101	76	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-26	3	101	76	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-26	3	101	76	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-26	3	101	76	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-26	3	101	76	171	NAC domain-containing protein 19
4dul_B	9e-26	3	101	76	171	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008652880.1	1e-135	NAC domain-containing protein 92
TrEMBL	A0A3L6QN81	1e-140	A0A3L6QN81_PANMI; Uncharacterized protein
STRING	Pavir.Ba01665.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46